Construct: ORF TRCN0000478896

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016345.1_s317c1
Derived from:
ccsbBroadEn_00997
DNA Barcode:
TCTCGTATATTATACATCGTACAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MEF2D (4209)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478896
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4209 MEF2D myocyte enhancer factor 2D NM_005920.4 99.8% 100% 282C>T;756A>G
2 human 4209 MEF2D myocyte enhancer factor 2D XM_005245169.4 99.8% 100% 282C>T;756A>G
3 human 4209 MEF2D myocyte enhancer factor 2D XM_005245170.3 99.8% 100% 282C>T;756A>G
4 human 4209 MEF2D myocyte enhancer factor 2D XM_006711330.3 99.8% 100% 282C>T;756A>G
5 human 4209 MEF2D myocyte enhancer factor 2D XM_011509569.3 99.8% 100% 282C>T;756A>G
6 human 4209 MEF2D myocyte enhancer factor 2D NM_001271629.2 98.5% 98.6% 282C>T;756A>G;853_854ins21
7 human 4209 MEF2D myocyte enhancer factor 2D XM_006711333.2 98.5% 98.6% 282C>T;756A>G;853_854ins21
8 human 4209 MEF2D myocyte enhancer factor 2D XM_017001314.1 98.5% 98.6% 282C>T;756A>G;853_854ins21
9 human 4209 MEF2D myocyte enhancer factor 2D XM_017001315.1 98.5% 98.6% 282C>T;756A>G;853_854ins21
10 human 4209 MEF2D myocyte enhancer factor 2D XM_006711332.3 94.6% 94% (many diffs)
11 human 4209 MEF2D myocyte enhancer factor 2D XM_006711334.3 93.3% 92.7% (many diffs)
12 human 4209 MEF2D myocyte enhancer factor 2D XR_001737184.1 23.6% (many diffs)
13 mouse 17261 Mef2d myocyte enhancer factor 2D NM_001310587.1 90.9% 95.9% (many diffs)
14 mouse 17261 Mef2d myocyte enhancer factor 2D XM_006501089.2 90.9% 95.9% (many diffs)
15 mouse 17261 Mef2d myocyte enhancer factor 2D XM_017319472.1 90.9% 95.9% (many diffs)
16 mouse 17261 Mef2d myocyte enhancer factor 2D NM_133665.4 89.6% 94.6% (many diffs)
17 mouse 17261 Mef2d myocyte enhancer factor 2D XM_011240032.2 89.6% 94.6% (many diffs)
18 mouse 17261 Mef2d myocyte enhancer factor 2D XM_006501090.3 87.3% 89.8% (many diffs)
19 mouse 17261 Mef2d myocyte enhancer factor 2D NM_001310593.1 86% 88.5% (many diffs)
20 mouse 17261 Mef2d myocyte enhancer factor 2D XM_017319473.1 86% 88.5% (many diffs)
21 mouse 17261 Mef2d myocyte enhancer factor 2D XM_011240033.2 83% 87.1% (many diffs)
22 mouse 17261 Mef2d myocyte enhancer factor 2D XM_011240034.2 72.1% 76% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1629
ORF length:
1563
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg gaggaaaaag attcagatcc agcgaatcac cgacgagcgg aaccgacagg
121tgactttcac caagcggaag tttggcctga tgaagaaggc gtatgagctg agcgtgctat
181gtgactgcga gatcgcactc atcatcttca accactccaa caagctgttc cagtacgcca
241gcaccgacat ggacaaggtg ctgctcaagt acacggagta caatgagcca cacgagagcc
301gcaccaacgc cgacatcatc gagaccctga ggaagaaggg cttcaatggc tgcgacagcc
361ccgagcccga cggggaggac tcgctggaac agagccccct gctggaggac aagtaccgac
421gcgccagcga ggagctcgac gggctcttcc ggcgctatgg gtcaactgtc ccggccccca
481actttgccat gcctgtcacg gtgcccgtgt ccaatcagag ctcactgcag ttcagcaatc
541ccagcggctc cctggtcacc ccttccctgg tgacatcatc cctcacggac ccgcggctcc
601tgtcccccca gcagccagca ctacagagga acagtgtgtc tcctggcctg ccccagcggc
661cagctagtgc gggggccatg ctggggggtg acctgaacag tgctaacgga gcctgcccca
721gccctgttgg gaatggctac gtcagtgctc gggcttcccc tggcctcctc cctgtggcca
781atggcaacag cctaaacaag gtcatccctg ccaagtctcc gcccccacct acccacagca
841cccagcttgg agcccccagc cgcaagcccg acctgcgagt catcacttcc caggcaggaa
901aggggttaat gcatcacttg actgaggacc atttagatct gaacaatgcc cagcgccttg
961gggtctccca gtctactcat tcgctcacca ccccagtggt ttctgtggca acgccgagtt
1021tactcagcca gggcctcccc ttctcttcca tgcccactgc ctacaacaca gattaccagt
1081tgaccagtgc agagctctcc tccttaccag cctttagttc acctgggggg ctgtcgctag
1141gcaatgtcac tgcctggcaa cagccacagc agccccagca gccgcagcag ccacagcctc
1201cacagcagca gccaccgcag ccacagcagc cacagccaca gcagcctcag cagccgcaac
1261agccaccTCA GCAACAGTCC CACCTGGTCC CTGTATCTCT CAGCAACCTC ATCCCGGGCA
1321GCCCCCTGCC CCACGTGGGT GCTGCCCTCA CAGTCACCAC CCACCCCCAC ATCAGCATCA
1381AGTCAGAACC GGTGTCCCCA AGCCGTGAGC GCAGCCCTGC GCCTCCCCCT CCAGCTGTGT
1441TCCCAGCTGC CCGCCCTGAG CCTGGCGATG GTCTCAGCAG CCCAGCCGGG GGATCCTATG
1501AGACGGGAGA CCGGGATGAC GGACGGGGGG ACTTCGGGCC CACACTGGGC CTGCTGCGCC
1561CAGCCCCAGA GCCTGAGGCT GAGGGCTCAG CTGTGAAGAG GATGCGGCTT GATACCTGGA
1621CATTAAAGTG CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
1681CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
1741TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGATCTCGT ATATTATACA TCGTACACAC
1801GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)