Construct: ORF TRCN0000478961

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007259.1_s317c1
Derived from:
ccsbBroadEn_13940
DNA Barcode:
GAAAGCGCCTCCCTATTTAAGAGC
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
RBL1 (5933)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478961
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5933 RBL1 RB transcriptional corepres... NM_183404.4 99.9% .7% 8delA
2 human 5933 RBL1 RB transcriptional corepres... NM_002895.5 94.8% .7% (many diffs)
3 human 5933 RBL1 RB transcriptional corepres... XM_024451957.1 92.4% .7% (many diffs)
4 human 5933 RBL1 RB transcriptional corepres... XM_024451956.1 91.7% .7% (many diffs)
5 human 5933 RBL1 RB transcriptional corepres... XM_017027992.1 85.2% .8% (many diffs)
6 human 5933 RBL1 RB transcriptional corepres... XM_006723842.3 78.8% .8% (many diffs)
7 human 5933 RBL1 RB transcriptional corepres... XM_024451958.1 69.5% 1% (many diffs)
8 human 5933 RBL1 RB transcriptional corepres... NM_001323281.2 54.9% 1.2% (many diffs)
9 human 5933 RBL1 RB transcriptional corepres... NM_001323282.2 54.9% 1.2% (many diffs)
10 mouse 19650 Rbl1 retinoblastoma-like 1 (p107) NM_011249.2 82.7% .7% (many diffs)
11 mouse 19650 Rbl1 retinoblastoma-like 1 (p107) NM_001139516.1 52% 1.3% (many diffs)
12 mouse 19650 Rbl1 retinoblastoma-like 1 (p107) XM_006499018.1 48.1% 1.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
147
ORF length:
81
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtt cgggacaagc cccacgctga gggggcggcg gtggtcgccg cagccgggga
121ggcgctacag gccctgtgcc aggagctgaa cctggacgag gggagcgcgg ccgaagccct
181ggacgacttt actgccatcc gaggcaacta cagcctagag ggagaagtta cacactggtt
241ggcatgttca ttatatgttg catgccgcaa aagcattatt cccacggttg gaaagggtat
301catggaaggc aactgtgttt cacttaccag aatactacgt tcagctaaat taagtttaat
361acaatttttt agtaaaatga agaaatggat ggacatgtca aatctaccac aagaatttcg
421tgaacgtata gaaaggctag agagaaattt tgaggtgtct actgtaatat tcaaaaaata
481tgagccaatt tttttagata tatttcaaaa tccatatgaa gaaccaccaa agttaccacg
541aagccggaag cagaggagga ttccttgcag tgttaaggat ctgtttaatt tctgttggac
601actttttgtt tatactaagg gtaattttcg gatgattggg gatgacttag taaactctta
661tcatttactt ctatgctgct tggatctgat ttttgccaat gcgattatgt gcccaaatag
721acaagacttg ctaaatccat catttaaagg tttaccatct gattttcata ctgctgactt
781tacggcttct gaagagccac cctgcatcat tgctgtactg tgtgaactgc atgatggact
841tctcgtagaa gcaaaaggaa taaaggagca ctactttaag ccatatattt caaaactctt
901tgacaggaag atattaaaag gagaatgcct cctggacctt tcaagtttta ctgataatag
961caaagcagtg aataaggagt atgaagagta tgttctaact gttggtgatt ttgatgagag
1021gatctttttg ggagcagacg cagaagagga aattggaaca cctcgaaagt tcactcgtga
1081caccccatta gggaaactga cagcacaggc taatgtggag tataaccttc aacagcactt
1141tgaaaaaaaa aggtcatttg caccttctac cccactgacc ggacggagat atttacgaga
1201aaaagaagca gtcattactc ctgttgcatc agccacccaa agtgtgagcc ggttacagag
1261tattgtggct ggtctgaaaa atgcaccaag tgaccaactt ataaatattt ttgaatcttg
1321tgtgcgtaat cctgtggaaa acattatgaa aatactaaaa ggaataggag agactttctg
1381tcaacactat actcaatcaa cagatgaaca gccaggatct cacatagact ttgctgtaaa
1441cagactaaag ctggcagaaa ttttgtatta taaaatacta gagactgtaa tggttcagga
1501aacacgaaga cttcatggaa tggacatgtc agttctttta gagcaagata tatttcatcg
1561ttccttgatg gcttgttgtt tggaaattgt gctctttgcc tatagctcac ctcgtacttt
1621tccttggatt attgaagttc tcaacttgca accattttac ttttataagg ttattgaggt
1681ggtgatccgc tcagaagagg ggctctcaag ggacatggtg aaacacctaa acagcattga
1741agaacagatt ttggagagtt tagcatggag tcacgattct gcactgtggg aggctctcca
1801ggtttctgca aacaaagttc ctacctgtga agaagttata ttcccaaata actttgaaac
1861aggaaatgga ggaaatgtgc agggacatct tcccctgatg ccaatgtctc ctctaatgca
1921cccaagagtc aaggaagttc gaactgacag tgggagtctt cgaagagata tgcaaccatt
1981gtctccaatt tctgtccatg aacgctacag ttctcctacc gcagggagtg ctaagagaag
2041actctttgga gaggaccccc caaaggaaat gcttatggac aagatcataa cagaaggaac
2101aaaattgaaa atcgctcctt cttcaagcat tactgctgaa aatgtatcaa ttttacctgg
2161tcaaactctt ctaacaatgg ccacagcccc agtaacagga acaacaggac ataaagttac
2221aattccatta catggtgtcg caaatgatgc tggagagatc acactgatac ctctttccat
2281gaatacaaat caggagtcca aagtcaagag tcctgtatca cttactgctc attcattaat
2341tggtgcttct ccaaaacaga ccaatctgac taaagcacaa gaggtacatt caactggaat
2401aaacaggcca aagagaactg ggtccttagc actattttac agaaaggtct atcatttggc
2461aagtgtacgc ttacgtgatc tatgtctaaa actggatgtt tcaaatgagt tacgaaggaa
2521gatatggacg tgttttgaat tcactttagt tcactgtcct gatctaatga aagacaggca
2581tttggatcag ctcctccttt gtgcctttta tatcatggca aaggtaacaa aagaagaaag
2641aacttttcaa gaaattatga aaagttatag gaatcagccc caagctaata gtcacgtata
2701tagaagtgtt cTGCTGAAAA GTATTCCAAG AGAAGTTGTG GCATATAATA AAAATATAAA
2761TGATGACTTT GAAATGATAG ATTGTGACTT AGAAGATGCT ACAAAAACAC CTGACTGTTC
2821CAGTGGACCA GTGAAAGAGG AAAGAGGTGA TCTTATAAAA TTTTACAATA CAATATATGT
2881AGGAAGAGTG AAGTCATTTG CACTGAAATA CGACTTGGCG AATCAGGACC ATATGATGGA
2941TGCTCCACCA CTCTCTCCTT TTCCACATAT TAAACAACAG CCAGGCTCAC CACGCCGCAT
3001TTCCCAGCAG CACTCCATTT ATATTTCCCC GCACAAGAAT GGGTCAGGCC TTACACCAAG
3061AAGCGCTCTG CTGTACAAGT TCAATGGCAG CCCTTCTAAG GTAAGGTGCC CAACCTTCTT
3121GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC
3181GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG
3241TGGAAAGGAC GAGAAAGCGC CTCCCTATTT AAGAGCACGC GTTAAGTCga caatcaacct
3301ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)

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