Construct: ORF TRCN0000478971
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000306.1_s317c1
- Derived from:
- ccsbBroadEn_05099
- DNA Barcode:
- ATGGGTTCTGTAGGGCCGCCGCAA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZDHHC15 (158866)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478971
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 158866 | ZDHHC15 | zinc finger DHHC-type conta... | NM_144969.3 | 100% | 100% | |
| 2 | human | 158866 | ZDHHC15 | zinc finger DHHC-type conta... | XM_006724624.4 | 100% | 100% | |
| 3 | human | 158866 | ZDHHC15 | zinc finger DHHC-type conta... | NM_001146256.1 | 97.3% | 97.3% | 135_136ins27 |
| 4 | human | 158866 | ZDHHC15 | zinc finger DHHC-type conta... | XM_017029296.2 | 96.5% | 95.8% | (many diffs) |
| 5 | human | 158866 | ZDHHC15 | zinc finger DHHC-type conta... | XM_024452342.1 | 67.9% | 67.9% | 0_1ins324 |
| 6 | human | 158866 | ZDHHC15 | zinc finger DHHC-type conta... | XM_017029297.1 | 55.7% | 55.7% | 0_1ins447 |
| 7 | human | 158866 | ZDHHC15 | zinc finger DHHC-type conta... | XM_017029298.1 | 52.4% | 51.6% | (many diffs) |
| 8 | human | 158866 | ZDHHC15 | zinc finger DHHC-type conta... | NM_001146257.2 | 39.6% | 34.9% | (many diffs) |
| 9 | human | 158866 | ZDHHC15 | zinc finger DHHC-type conta... | XR_001755658.2 | 17.8% | 1_16del;1028_5649del | |
| 10 | human | 158866 | ZDHHC15 | zinc finger DHHC-type conta... | XR_002958764.1 | 15.1% | 1_235del;717_718ins121;1126_5747del | |
| 11 | human | 158866 | ZDHHC15 | zinc finger DHHC-type conta... | XR_938393.2 | 14.8% | 1_16del;1028_6822del | |
| 12 | mouse | 108672 | Zdhhc15 | zinc finger, DHHC domain co... | NM_175358.4 | 93.7% | 97.9% | (many diffs) |
| 13 | mouse | 108672 | Zdhhc15 | zinc finger, DHHC domain co... | XM_011247506.1 | 89.2% | 92.9% | (many diffs) |
| 14 | mouse | 108672 | Zdhhc15 | zinc finger, DHHC domain co... | XM_011247505.1 | 89% | 92.6% | (many diffs) |
| 15 | mouse | 108672 | Zdhhc15 | zinc finger, DHHC domain co... | XM_017318342.1 | 60.1% | 58.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1080
- ORF length:
- 1011
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gcggcgaggc tggaagatgg ctctgtctgg ggggctgcgg tgctgccgcc 121 gggtactgtc ctgggtgcca gtgctcgtta ttgtcctcgt cgtgctctgg tcctactatg 181 cctacgtctt tgaactctgc ctggtgactg ttttgagccc agcagaaaaa gttatttacc 241 tcatactcta ccatgccatc tttgtgttct ttacctggac ctactggaag tctatcttta 301 cactcccaca gcagccaaac cagaagttcc acttgtccta cacagacaag gagcgctatg 361 aaaatgaaga aagacctgag gtccagaagc agatgcttgt tgatatggcc aaaaagctac 421 cggtttacac aagaactgga agtggagctg tacgattctg tgaccggtgt catctgatca 481 agccagaccg ctgccaccac tgctctgtct gtgctatgtg tgtgttaaaa atggatcatc 541 actgcccttg ggttaataac tgcattggat tttccaacta caaattcttc cttcaattct 601 tagcttactc tgttctctac tgcctgtaca ttgctacgac agtcttcagc tatttcatca 661 aatactggag aggggaatta cccagtgttc gctctaagtt ccatgtcctt ttTCTTCTCT 721 TTGTGGCCTG CATGTTTTTT GTCAGCCTTG TGATTCTCTT TGGTTACCAT TGTTGGCTTG 781 TCAGCAGAAA CAAAACCACC TTAGAGGCCT TCTGCACTCC AGTGTTTACA AGTGGCCCAG 841 AGAAAAATGG GTTCAACCTT GGCTTCATCA AGAATATCCA GCAGGTGTTT GGAGATAAGA 901 AGAAGTTCTG GTTAATACCT ATTGGTTCCA GCCCTGGTGA TGGACACTCC TTCCCTATGA 961 GGTCTATGAA TGAGTCACAG AACCCACTGC TAGCAAATGA AGAAACCTGG GAAGACAACG 1021 AGGATGACAA CCAAGATTAT CCAGAAGGCT CATCATCTCT TGCTGTGGAA ACGGAAACAT 1081 TGCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG 1141 GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC 1201 TTTATATATC TTGTGGAAAG GACGAATGGG TTCTGTAGGG CCGCCGCAAA CGCGTTAAGT 1261 Cgacaatcaa cctctggatt acaaaatttg tgaaagatt