Construct: ORF TRCN0000479305

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006142.1_s317c1
Derived from:
ccsbBroadEn_07845
DNA Barcode:
GCAAACTTTAATGTTCCAACAGAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TBC1D9 (23158)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479305
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23158 TBC1D9 TBC1 domain family member 9 NM_015130.3 99.9% 100% 3153C>T
2 mouse 71310 Tbc1d9 TBC1 domain family, member 9 NM_001111304.1 86.8% 95.8% (many diffs)
3 mouse 71310 Tbc1d9 TBC1 domain family, member 9 NM_027758.4 70.8% 77.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3867
ORF length:
3798
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gtgggtgaac ccggaggagg tgttgctggc caacgcgctg tggatcaccg
121agagggccaa cccatacttc atcctgcagc ggaggaaggg ccacgccggc gatggaggcg
181gcggcggcgg actggcgggc ctgctggtgg gtacccttga tgttgtgttg gactccagcg
241cccgggtcgc tccttaccga atcttgtacc agactccaga ctccctggtc tactggacca
301tcgcctgtgg tggttccagg aaagaaatca ctgaacactg ggaatggctt gagcaaaatc
361tcttgcagac actctccatc tttgaaaatg agaatgatat caccacattt gtgagaggaa
421aaatacaggg catcattgca gaatacaaca aaatcaatga tgtaaaggaa gatgatgaca
481cggagaagtt taaagaagcc attgtgaaat ttcataggct gtttgggatg ccagaggaag
541agaaactcgt caactattac tcttgcagct attggaaggg gaaggtcccc cgtcagggtt
601ggatgtacct cagcattaac cacctttgct tttattcttt tcttatggga agggaagcga
661aactggtcat ccggtgggta gacatcactc agcttgagaa gaatgccacc ctgcttctgc
721ctgatgtgat caaagtgagc acacggtcca gtgagcattt cttctctgta ttcctcaaca
781tcaacgagac cttcaagtta atggagcagc ttgccaacat agccatgagg caactcttag
841acaatgaggg atttgaacaa gatcgatccc tgcccaaact caaaaggaaa tctcctaaaa
901aagtgtctgc tctaaaacgt gatcttgatg ccagggcaaa gagtgagaga taccgtgcac
961ttttccggct gcccaaagat gaaaaattag atggccacac agactgcact ctctggactc
1021catttaacaa aatgcacatt ttggggcaga tgtttgtgtc cacaaattac atctgtttta
1081ccagcaagga ggagaactta tgtagcctca ttatcccgct ccgtgaggtg acaattgtgg
1141aaaaggcaga cagctccagt gtgctcccca gtcccttatc catcagcacc cgaaacagga
1201tgaccttcct atttgccaac ttgaaagata gagactttct agtgcagagg atctcagatt
1261tcctgcaaca gactacttcc aaaatatatt ctgacaagga gtttgcagga agttacaaca
1321gttcagatga tgaggtgtac tctcgaccca gcagcctcgt ctcctccagc ccccagagaa
1381gcacgagctc tgatgctgat ggagagcgcc agtttaacct aaatggcaac agcgtcccca
1441cagccacaca gaccctgatg accatgtatc ggcggcggtc tcccgaggag ttcaacccga
1501aattggccaa agagtttctg aaagagcaag cctggaagat tcactttgct gagtatgggc
1561aagggatctg catgtaccgc acagagaaaa cgcgggagct ggtgttgaag ggcatcccgg
1621agagcatgcg tggggagctc tggctgctgc tgtcaggtgc catcaatgag aaggccacac
1681atcctgggta ctatgaagac ctagtggaga agtccatggg gaagtataat ctcgccacgg
1741aggagattga gagggattta caccgctccc ttccagaaca cccagctttt cagaatgaaa
1801tgggcattgc tgcactaagg agagtcttaa cagcttatgc ttttcgaaat cccaacatag
1861ggtattgcca ggccatgaat attgtcactt cagtgctgct gctttatgcc aaagaggagg
1921aagctttctg gctgcttgtg gctttgtgtg agcgcatgct cccagattac tacaacacca
1981gagttgtggg tgcactggtg gaccaaggtg tctttgagga gctagcacga gactacgtcc
2041cacagctgta cgactgcatg caagacctgg gcgtgatttc caccatctcc ctgtcttggt
2101tcctcacact atttctcagt gtgatgcctt ttgagagtgc agttgtggtt gttgactgtt
2161tcttctatga aggaattaaa gtgatattcc agttggccct agctgtgctg gatgcaaatg
2221tggacaaact gttgaactgc aaggatgatg gggaggccat gaccgttttg ggaaggtatt
2281tagacagtgt gaccaataaa gacagcacac tgcctcccat tcctcacctc cactccttgc
2341tcagcgatga tgtggaacct taccctgagg tagacatctt tagactcatc agaacttcct
2401acgagaaatt cggaactatc cgggcagatt tgattgaaca gatgagattc aaacagagac
2461tgaaagtgat ccagacgctg gaggatacta cgaaacgcaa cgtggtacga accattgtga
2521cagaaacttc ctttaccatt gatgagctgg aagaacttta tgctcttttc aaggcagaac
2581atctcaccag ctgctactgg ggcgggagca gcaacgcgct ggaccggcat gaccccagcc
2641tgccctacct ggaacagtat cgcattgact tcgagcagtt caagggaatg tttgctcttc
2701tctttccttg ggcatgtgga actcactctg acgttctggc ctcccgcttg ttccagttat
2761tagatgaaaa tggagactct ttgattaact tccgggagtt tgtctctggg ctaagtgctg
2821catgccatgg ggacctcaca gagaagctca aactcctgta caaaatgcac gtcttgcctg
2881agccatcctc tgatcaagat gaaccagatt ctgcttttga agcaactcag tacttctttg
2941aagatattac cccagaatgt acacatgttg ttggattgga tagcagaagc aaacagggtg
3001cagatgatgg ctttgttacg gtgagcctaa agccagacaa agggaagaga gcaaattccc
3061aagaaaatcg taattatttg agactgtgga ctccagaaaa taaatctaag tcaaagaatg
3121caaaggattt acccaaatta aatcaggggc agttcattga actgtgtaag acaatgtata
3181acatgttcag cgaagacccc aatgagcagg agctgtacca tgccacggca gcagtgacca
3241gcctcctgct ggagattggg gaggtcggca agttgttcgt ggcccagcct gcaaaggagg
3301gcgggagcgg aggcagtggg ccgtcctgcc accagggcat cccaggcgtg ctcttcccca
3361agaaagggcc aggccagcct tacgtggtgg agtctgttga gcccctgccg gccagcctgg
3421cccccgacag cgaggaaCAC TCCCTTGGAG GACAAATGGA GGACATCAAG CTGGAGGACT
3481CCTCGCCCCG GGACAACGGG GCCTGCTCCT CCATGCTGAT CTCTGACGAC GACACCAAGG
3541ACGACAGCTC CATGTCCTCA TACTCGGTGC TGAGTGCCGG CTCCCACGAG GAGGACAAGC
3601TGCACTGCGA GGACATCGGA GAGGACACGG TCCTGGTGCG GAGCGGCCAG GGCACGGCGG
3661CACTGCCCCG GAGCACCAGC CTGGACCGGG ACTGGGCCAT CACCTTCGAG CAGTTCCTGG
3721CCTCCCTCTT AACTGAGCCT GCCCTGGTCA AGTACTTTGA CAAGCCCGTG TGCATGATGG
3781CCAGGATTAC CAGTGCAAAA AACATCCGGA TGATGGGCAA GCCCCTCACC TCGGCCAGTG
3841ACTATGAAAT CTCGGCCATG TCCGGCTTGC CAACTTTCTT GTACAAAGTG GTTGATATCG
3901GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
3961AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GAGCAAACTT
4021TAATGTTCCA ACAGATACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga
4081aagatt

Download FASTA (ORF) (Full)