Construct: ORF TRCN0000479473
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013446.2_s317c1
- Derived from:
- ccsbBroadEn_06056
- DNA Barcode:
- AGTTACCGTGACGGCATGCCTGAA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CSNK1D (1453)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000479473
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1453 | CSNK1D | casein kinase 1 delta | NM_001893.6 | 99.9% | 100% | 1077C>T |
| 2 | human | 1453 | CSNK1D | casein kinase 1 delta | NM_139062.4 | 96.8% | 95.4% | (many diffs) |
| 3 | human | 1453 | CSNK1D | casein kinase 1 delta | NM_001363749.2 | 94.8% | 94.1% | (many diffs) |
| 4 | human | 1453 | CSNK1D | casein kinase 1 delta | XM_005256336.4 | 91.1% | 89.7% | (many diffs) |
| 5 | human | 102800317 | TPTEP2-CSNK1E | TPTEP2-CSNK1E readthrough | NM_001289912.2 | 76.9% | 81% | (many diffs) |
| 6 | human | 1454 | CSNK1E | casein kinase 1 epsilon | NM_001894.4 | 76.9% | 81% | (many diffs) |
| 7 | human | 1454 | CSNK1E | casein kinase 1 epsilon | NM_152221.3 | 76.9% | 81% | (many diffs) |
| 8 | human | 1453 | CSNK1D | casein kinase 1 delta | XR_243518.4 | 31.2% | (many diffs) | |
| 9 | human | 1453 | CSNK1D | casein kinase 1 delta | XR_933922.3 | 30.9% | (many diffs) | |
| 10 | human | 1453 | CSNK1D | casein kinase 1 delta | XR_430028.4 | 29.4% | (many diffs) | |
| 11 | human | 1453 | CSNK1D | casein kinase 1 delta | XR_002957961.1 | 29.2% | (many diffs) | |
| 12 | human | 1453 | CSNK1D | casein kinase 1 delta | XR_933923.3 | 27.8% | (many diffs) | |
| 13 | human | 1453 | CSNK1D | casein kinase 1 delta | NR_110578.2 | 26.7% | (many diffs) | |
| 14 | mouse | 104318 | Csnk1d | casein kinase 1, delta | NM_139059.2 | 90.2% | 99.7% | (many diffs) |
| 15 | mouse | 104318 | Csnk1d | casein kinase 1, delta | NM_027874.2 | 87.2% | 95.2% | (many diffs) |
| 16 | mouse | 104318 | Csnk1d | casein kinase 1, delta | XM_011248662.1 | 85.1% | 93.6% | (many diffs) |
| 17 | mouse | 104318 | Csnk1d | casein kinase 1, delta | XM_011248663.2 | 85.1% | 93.6% | (many diffs) |
| 18 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | NM_001289899.1 | 70.6% | 70.2% | (many diffs) |
| 19 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | XM_017316660.1 | 70.6% | 70.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1311
- ORF length:
- 1245
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgga gctgagagtc gggaacaggt accggctggg ccggaagatc ggcagcggct 121 ccttcggaga catctatctc ggtacggaca ttgctgcagg agaagaggtt gccatcaagc 181 ttgaatgtgt caaaaccaaa caccctcagc tccacattga gagcaaaatc tacaagatga 241 tgcagggagg agtgggcatc cccaccatca gatggtgcgg ggcagagggg gactacaacg 301 tcatggtgat ggagctgctg gggccaagcc tggaggacct cttcaacttc tgctccagga 361 aattcagcct caaaaccgtc ctgctgcttg ctgaccaaat gatcagtcgc atcgaataca 421 ttcattcaaa gaacttcatc caccgggatg tgaagccaga caacttcctc atgggcctgg 481 ggaagaaggg caacctggtg tacatcatcg acttcgggct ggccaagaag taccgggatg 541 cacgcaccca ccagcacatc ccctatcgtg agaacaagaa cctcacgggg acggcgcggt 601 acgcctccat caacacgcac cttggaattg aacaatcccg aagagatgac ttggagtctc 661 tgggctacgt gctaatgtac ttcaacctgg gctctctccc ctggcagggg ctgaaggctg 721 ccaccaagag acagaaatac gaaaggatta gcgagaagaa aatgtccacc cccatcgaag 781 tgttgtgtaa aggctaccct tccgaatttg ccacatacct gaatttctgc cgttccttgc 841 gttttgacga caagcctgac tactcgtacc tgcggcagct tttccggaat ctgttccatc 901 gccagggctt ctcctatgac tacgtgttcg actggaacat gctcaaattt ggtgccagcc 961 gggccgccga tgacgccgag cgggagcgca gggaccgaga ggagcggctg agacactcgc 1021 ggaacccggc tacccgcggc ctcccttcca cagcctccgg ccgcctgcgg gggacgcagg 1081 aagtggcTCC CCCCACACCC CTCACCCCTA CCTCACACAC GGCTAACACC TCCCCCCGGC 1141 CTGTCTCCGG CATGGAGAGA GAGCGGAAAG TGAGTATGCG GCTGCACCGC GGGGCCCCCG 1201 TCAACATCTC CTCGTCCGAC CTCACAGGCC GACAAGATAC CTCTCGCATG TCCACCTCAC 1261 AGATTCCTGG TCGGGTGGCT TCCAGTGGTC TTCAGTCTGT CGTGCACCGA TGCCCAACTT 1321 TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT 1381 CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT 1441 CTTGTGGAAA GGACGAAGTT ACCGTGACGG CATGCCTGAA ACGCGTTAAG TCgacaatca 1501 acctctggat tacaaaattt gtgaaagatt