Construct: ORF TRCN0000479564
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000858.1_s317c1
- Derived from:
- ccsbBroadEn_07592
- DNA Barcode:
- CGCGGTAAGCACCTCATGCGCCGC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CEPT1 (10390)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000479564
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10390 | CEPT1 | choline/ethanolamine phosph... | NM_001007794.2 | 99.9% | 100% | 501T>C |
| 2 | human | 10390 | CEPT1 | choline/ethanolamine phosph... | NM_001330743.2 | 99.9% | 100% | 501T>C |
| 3 | human | 10390 | CEPT1 | choline/ethanolamine phosph... | NM_006090.5 | 99.9% | 100% | 501T>C |
| 4 | human | 10390 | CEPT1 | choline/ethanolamine phosph... | XM_011540496.2 | 96.8% | 96.8% | (many diffs) |
| 5 | human | 10390 | CEPT1 | choline/ethanolamine phosph... | XM_024450080.1 | 96.8% | 96.8% | (many diffs) |
| 6 | human | 10390 | CEPT1 | choline/ethanolamine phosph... | NR_138483.2 | 54.5% | (many diffs) | |
| 7 | human | 10390 | CEPT1 | choline/ethanolamine phosph... | NR_138484.2 | 53.1% | (many diffs) | |
| 8 | human | 10390 | CEPT1 | choline/ethanolamine phosph... | XR_001736911.2 | 51.6% | (many diffs) | |
| 9 | human | 10390 | CEPT1 | choline/ethanolamine phosph... | NR_138485.2 | 49.3% | (many diffs) | |
| 10 | mouse | 99712 | Cept1 | choline/ethanolaminephospho... | NM_133869.4 | 93.7% | 98.5% | (many diffs) |
| 11 | mouse | 99712 | Cept1 | choline/ethanolaminephospho... | XM_006502471.3 | 93.7% | 98.5% | (many diffs) |
| 12 | mouse | 99712 | Cept1 | choline/ethanolaminephospho... | XM_006502472.3 | 93.7% | 98.5% | (many diffs) |
| 13 | mouse | 99712 | Cept1 | choline/ethanolaminephospho... | XM_017319840.1 | 93.7% | 98.5% | (many diffs) |
| 14 | mouse | 99712 | Cept1 | choline/ethanolaminephospho... | NM_001293694.1 | 90.5% | 95.1% | (many diffs) |
| 15 | mouse | 99712 | Cept1 | choline/ethanolaminephospho... | XR_001783787.1 | 53.2% | (many diffs) | |
| 16 | mouse | 99712 | Cept1 | choline/ethanolaminephospho... | XR_375610.2 | 52.6% | (many diffs) | |
| 17 | mouse | 99712 | Cept1 | choline/ethanolaminephospho... | XR_001783786.1 | 51.2% | (many diffs) | |
| 18 | mouse | 99712 | Cept1 | choline/ethanolaminephospho... | XM_006502473.3 | 51% | 53.6% | (many diffs) |
| 19 | mouse | 99712 | Cept1 | choline/ethanolaminephospho... | XM_011240336.1 | 48.8% | 48.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1314
- ORF length:
- 1248
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgag tgggcatcga tcaacaagga aaagatgtgg agattctcac ccggagtccc 121 cagtgggctt cgggcatatg agtactacag gatgtgtatt aaataaattg tttcagttac 181 caacaccacc attgtcaaga caccaactaa agcggctaga agaacacaga tatcaaagtg 241 ctggacggtc cctgcttgag cccttaatgc aagggtattg ggaatggctc gttagaagag 301 ttccctcctg gattgcccca aatctcatca ccatcattgg actgtcaata aacatctgta 361 caactatttt attagtcttc tactgcccta cagctacaga gcaggcacct ctgtgggcat 421 atattgcttg tgcctgtggc cttttcattt accagtcttt ggatgctatt gatgggaaac 481 aggcaagaag aaccaatagt agttctcctc tgggagaact ttttgatcat ggctgtgatt 541 cactatcaac agtttttgtg gttctcggaa cttgtattgc agtgcagctg gggacaaacc 601 ctgattggat gtttttttgt tgttttgcgg ggacatttat gttctattgt gcgcactggc 661 aaacgtatgt ttctggaaca ttgcgatttg gaataattga tgtgactgaa gtgcaaatct 721 tcataataat catgcatttg ctggcagtga ttggaggacc acctttttgg caatctatga 781 ttccagtgct gaatattcaa atgaaaattt ttcctgcact ttgtactgta gcagggacca 841 tattttcctg tacaaattac ttccgtgtaa tcttcacagg tggtgttggc aaaaatggaT 901 CAACAATAGC AGGAACAAGT GTCCTTTCTC CTTTTCTCCA TATTGGATCA GTGATTACAT 961 TAGCTGCAAT GATCTACAAG AAATCTGCAG TTCAGCTTTT TGAAAAGCAT CCCTGTCTTT 1021 ATATACTGAC ATTTGGTTTT GTGTCTGCTA AAATCACTAA TAAGCTTGTG GTTGCACACA 1081 TGACGAAAAG TGAAATGCAT TTGCATGACA CAGCATTCAT AGGTCCGGCA CTTTTGTTTC 1141 TGGACCAGTA TTTTAACAGC TTTATTGATG AATATATTGT ACTTTGGATT GCCCTGGTTT 1201 TCTCTTTCTT TGATTTGATC CGCTACTGTG TCAGTGTTTG CAATCAGATT GCGTCTCACC 1261 TGCACATACA TGTCTTCAGA ATCAAGGTCT CTACAGCTCA TTCTAATCAT CATTACCCAA 1321 CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG 1381 ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA 1441 TATCTTGTGG AAAGGACGAC GCGGTAAGCA CCTCATGCGC CGCACGCGTT AAGTCgacaa 1501 tcaacctctg gattacaaaa tttgtgaaag att