Construct: ORF TRCN0000479605

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003002.1_s317c1
Derived from:
ccsbBroadEn_13875
DNA Barcode:
CACTTCATTTGTATTATAGTATAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
AGFG2 (3268)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479605
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3268 AGFG2 ArfGAP with FG repeats 2 XM_017012113.1 50.3% 48.3% (many diffs)
2 human 3268 AGFG2 ArfGAP with FG repeats 2 NM_006076.5 31% 29.9% (many diffs)
3 human 3268 AGFG2 ArfGAP with FG repeats 2 XM_005250306.2 30.3% 29.2% (many diffs)
4 human 3268 AGFG2 ArfGAP with FG repeats 2 XM_017012112.1 13.1% 12.2% (many diffs)
5 mouse 231801 Agfg2 ArfGAP with FG repeats 2 XM_006504570.2 31.2% 31.8% (many diffs)
6 mouse 231801 Agfg2 ArfGAP with FG repeats 2 XM_006504569.2 28.4% 29% (many diffs)
7 mouse 231801 Agfg2 ArfGAP with FG repeats 2 NM_178162.3 28.4% 29% (many diffs)
8 mouse 231801 Agfg2 ArfGAP with FG repeats 2 NM_001303271.1 27.8% 28.4% (many diffs)
9 mouse 231801 Agfg2 ArfGAP with FG repeats 2 NM_001303266.1 27.7% 28.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
531
ORF length:
465
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg gatggcggcg aagaagggcc cgggcccggg cggcggggtc agcgggggca
121aggcggaggc ggaggcggcc TCGGAGGTGT GGTGCCGTCG GGTGCGGGAG CTGGGTGGCT
181GCAGCCAGGC CGGGAACCGC CACTGCTTCG AGTGCGCCCA GCGCGGGGTC ACCTACGTGG
241ATATCACCGT GGGCAGCTTC GTGTGCACCA CCTGCTCCGG CCTCCTGAGA GGGCTGAACC
301CCCCTCATCG TGTCAAGTCA ATCTCCATGA CAACTTTCAC TGAGCCTGAA GTAGTATTCC
361TGCAATCCCG TGGAAATGAG GTTTGCCGGA AGATTTGGTT GGGTCTGTTT GATGCTCGGA
421CATCTTTAGT ACCAGATTCC AGGGATCCTC AGAAAGTGAA GGAGTTTCTC CAGGAAAAAT
481ATGAGAAGAA GAGATGGCCA GACACCTTCC CAAGGAGGCT TTGCCAACTT TGCCCAGCTT
541TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
601CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
661CTTGTGGAAA GGACGACACT TCATTTGTAT TATAGTATAT ACGCGTTAAG TCgacaatca
721acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)