Construct: ORF TRCN0000479743

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005350.1_s317c1
Derived from:
ccsbBroadEn_11079
DNA Barcode:
AGTCACTAGGTTGCTAGAGCATCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PTPRN (5798)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479743
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5798 PTPRN protein tyrosine phosphatas... NM_001199764.2 66.4% 66.4% 1_894del
2 human 5798 PTPRN protein tyrosine phosphatas... NM_002846.4 60.3% 60.3% 1_1164del
3 human 5798 PTPRN protein tyrosine phosphatas... XM_017004609.2 60.3% 60.3% 1_1167del
4 human 5798 PTPRN protein tyrosine phosphatas... NM_001199763.2 57.4% 57.3% 1_1164del;1436_1437ins87
5 human 5798 PTPRN protein tyrosine phosphatas... XM_017004610.2 57.3% 57.2% 1_1167del;1439_1440ins87
6 human 5798 PTPRN protein tyrosine phosphatas... XM_011511566.2 52.9% 52.9% 1_1164del;1665_1666ins219
7 human 5798 PTPRN protein tyrosine phosphatas... XM_017004611.2 52.8% 52.8% 1_1167del;1668_1669ins219
8 human 5798 PTPRN protein tyrosine phosphatas... XM_017004612.2 49.9% 49.8% 1_1164del;1436_1437ins87;1578_1579ins219
9 mouse 19275 Ptprn protein tyrosine phosphatas... XM_006496445.1 59.1% 61% (many diffs)
10 mouse 19275 Ptprn protein tyrosine phosphatas... XM_011238677.1 59.1% 61% (many diffs)
11 mouse 19275 Ptprn protein tyrosine phosphatas... XM_011238678.2 59.1% 61% (many diffs)
12 mouse 19275 Ptprn protein tyrosine phosphatas... XM_006496444.1 55% 56.8% (many diffs)
13 mouse 19275 Ptprn protein tyrosine phosphatas... NM_008985.2 53.5% 55.2% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1839
ORF length:
1773
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga ggggccggtg gagggcagag acacagcaga gcttccagcc cgcacatccc
121ccatgcctgg acaccccact gccagcccta cctccagtga agtccagcag gtgccaagcc
181ctgtctcctc tgagcctccc aaagctgcca gaccccctgt gacacctgtc ctgctagaga
241agaaaagccc actgggccag agccagccca cggtggcagg acagccctca gcccgcccag
301cagcagagga atatggctac atcgtcactg atcagaagcc cctgagcctg gctgcaggag
361tgaagctgct ggagatcctg gctgagcatg tgcacatgtc ctcaggcagc ttcatcaaca
421tcagtgtggt gggaccagcc ctcaccttcc gcatccggca caatgagcag aacctgtctt
481tggctgatgt gacccaacaa gcagggctgg tgaagtctga actggaagca cagacagggc
541tccaaatctt gcagacagga gtgggacaga gggaggaggc agctgcagtc cttccccaaa
601ctgcgcacag cacctcaccc atgcgctcag tgctgctcac tctggtggcc ctggcaggtg
661tggctgggct gctggtggct ctggctgtgg ctctgtgtgt gcggcagcat gcgcggcagc
721aagacaagga gcgcctggca gccctggggc ctgagggggc ccatggtgac actacctttg
781agtaccagga cctgtgccgc cagcacatgg ccacgaagtc cttgttcaac cgggcagagg
841gtccaccgga gccttcacgg gtgagcagtg tgtcctccca gttcagcgac gcagcccagg
901ccagccccag ctcccacagc agcaccccgt cctggtgcga ggagccggcc caagccaaca
961tggacatctc cacgggacac atgattctgg catacatgga ggatcacctg cggaaccggg
1021accgccttgc caaggagtgg caggccctct gtgcctacca agcagagcca aacacctgtg
1081ccaccgcgca gggggagggc aacatcaaaa agaaccggca tcctgacttc ctgccctatg
1141accatgcccg cataaaactg aaggtggaga gcagcccttc tcggagcgat tacatcaacg
1201ccagccccat tattgagcat gaccctcgga tgccagccta catagccacg cagggcccgc
1261tgtcccatac catcgcagac ttctggcaga tggtgtggga gagcggctgc accgtcatcg
1321tcatgctgac cccgctggtg gaggatggtg tcaagcagtg tgaccgctac tggccagatg
1381agggtgcctc cctctaccac gtatatgagg tgaacctggt gtcggagcac atctggtgcg
1441aggactttct ggtgcggagc ttctacctga agaacgtgca gacccaggag acgcgcacgc
1501tcacgcagtt ccacttccTC AGCTGGCCGG CAGAGGGCAC ACCGGCCTCC ACGCGGCCCC
1561TGCTGGACTT CCGCAGGAAG GTGAACAAGT GCTACCGGGG CCGCTCCTGC CCCATCATCG
1621TGCACTGCAG TGATGGTGCG GGGAGGACCG GCACCTACAT CCTCATCGAC ATGGTCCTGA
1681ACCGCATGGC AAAAGGAGTG AAGGAGATTG ACATCGCTGC CACCCTGGAG CATGTCCGTG
1741ACCAGCGGCC TGGCCTTGTC CGCTCTAAGG ACCAGTTTGA ATTTGCCCTG ACAGCCGTGG
1801CGGAGGAAGT GAATGCCATC CTCAAGGCCC TGCCCCAGTG CCCAACTTTC TTGTACAAAG
1861TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
1921GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
1981ACGAAGTCAC TAGGTTGCTA GAGCATCCAC GCGTTAAGTC gacaatcaac ctctggatta
2041caaaatttgt gaaagatt

Download FASTA (ORF) (Full)