Construct: ORF TRCN0000479874

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005240.1_s317c1
Derived from:
ccsbBroadEn_04052
DNA Barcode:
TAGACTCACTTTTCAGATGCCCAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NDUFAF5 (79133)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479874
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... NM_001039375.3 100% 100%
2 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... NM_024120.5 88.2% 86.3% 325_326insAGCTTCAGTTATTCCATTGC;375_478del
3 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... XR_937140.2 72.7% (many diffs)
4 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... XM_011529342.2 67.4% 59.3% (many diffs)
5 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... NM_001352408.1 59.3% 55.4% (many diffs)
6 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... NM_001352403.2 59.3% 59.3% 0_1ins387
7 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... XM_006723624.2 59.3% 59.3% 0_1ins387
8 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... XM_024451999.1 59.3% 59.3% 0_1ins387
9 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... NM_001352406.2 49.8% 49.8% 0_1ins477
10 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... NM_001352407.2 49.8% 49.8% 0_1ins477
11 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... XR_430269.3 19.2% (many diffs)
12 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... XR_001754396.1 17.4% 1_43del;735_832del;1093_5465del
13 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... NR_147979.2 17% (many diffs)
14 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... NR_147980.2 17% (many diffs)
15 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... NR_147983.2 16.9% (many diffs)
16 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... NR_147978.2 16.8% (many diffs)
17 human 79133 NDUFAF5 NADH:ubiquinone oxidoreduct... NR_029377.2 16.7% (many diffs)
18 mouse 69487 Ndufaf5 NADH:ubiquinone oxidoreduct... XM_011239768.2 84% 83.5% (many diffs)
19 mouse 69487 Ndufaf5 NADH:ubiquinone oxidoreduct... NM_027093.4 74.1% 74.2% (many diffs)
20 mouse 69487 Ndufaf5 NADH:ubiquinone oxidoreduct... XM_030252052.1 52.2% 53.9% (many diffs)
21 mouse 69487 Ndufaf5 NADH:ubiquinone oxidoreduct... XM_030252053.1 43.7% 45.1% (many diffs)
22 mouse 69487 Ndufaf5 NADH:ubiquinone oxidoreduct... XR_003953715.1 4.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1017
ORF length:
951
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgct gcggccggca gggctctggc gcttatgtcg gcgaccttgg gcggcgaggg
121tcccagcgga gaatcttggc cgtagggaag tcacctctgg tgtctctccc cgcggtagca
181cctcgcccag aaccctgaat attttcgacc gggatttgaa aaggaaacag aagaactggg
241cagcccggca gcccgagccg accaaatttg actacctgaa ggaggaggtt ggaagtcgga
301tcgcagaccg tgtatatgac atacccagaa atttccccct tgctttggat cttggttgtg
361gaagaggtta cattgcacaa tatttgaata agcttcagtt attccattgc aggaaactat
421tggaaagttt ttccaagctg acattgcaga aaatgctttg tttgcattgg gtgaatgacc
481ttcctagagc acttgagcag attcattata ttttaaaacc agatggagtg tttatcggtg
541caatgtttgg aggcgacaca ctctatgaac ttcggtgttc cttacagtta gcggaaacgg
601aaagggaagg aggattttct ccacacattt ctcctttcac tgctgtcaat gacctgggac
661atctgcttgg gagagctggc tttaatactc tgactgtgga cactgatgaa attcaagtta
721actaTCCTGG AATGTTTGAA TTGATGGAAG ATTTACAAGG TATGGGTGAG AGTAACTGTG
781CTTGGAATAG AAAAGCCCTG CTGCATCGAG ACACAATGCT GGCAGCTGCG GCAGTGTACA
841GAGAAATGTA CAGAAATGAA GATGGTTCAG TACCTGCTAC ATACCAGATC TATTACATGA
901TAGGATGGAA ATATCATGAG TCACAGGCAA GACCAGCTGA AAGAGGTTCC GCAACTGTGT
961CATTTGGAGA GCTAGGAAAA ATAAACAACC TTATGCCACC GGGGAAAAAA TCACAATACC
1021CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
1081TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
1141ATATATCTTG TGGAAAGGAC GATAGACTCA CTTTTCAGAT GCCCATACGC GTTAAGTCga
1201caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)