Construct: ORF TRCN0000480021

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008911.1_s317c1
Derived from:
ccsbBroadEn_12364
DNA Barcode:
CTGAATGGTCAGGTTACATATGTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
STAMBPL1 (57559)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480021
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57559 STAMBPL1 STAM binding protein like 1 NM_020799.4 96.4% 96.5% 1_45del;750G>A
2 human 57559 STAMBPL1 STAM binding protein like 1 XM_006717928.2 96.4% 96.5% 1_45del;750G>A
3 human 57559 STAMBPL1 STAM binding protein like 1 XM_006717930.3 96.4% 96.5% 1_45del;750G>A
4 human 57559 STAMBPL1 STAM binding protein like 1 XM_011539983.1 96.4% 96.5% 1_45del;750G>A
5 human 57559 STAMBPL1 STAM binding protein like 1 XM_011539985.2 96.4% 96.5% 1_45del;750G>A
6 human 57559 STAMBPL1 STAM binding protein like 1 XM_017016453.1 96.4% 96.5% 1_45del;750G>A
7 human 57559 STAMBPL1 STAM binding protein like 1 XM_017016455.1 96.4% 96.5% 1_45del;750G>A
8 human 57559 STAMBPL1 STAM binding protein like 1 XM_017016456.1 96.4% 96.5% 1_45del;750G>A
9 human 57559 STAMBPL1 STAM binding protein like 1 XM_017016457.2 85.9% 86% 1_45del;750G>A;903_904ins138
10 human 57559 STAMBPL1 STAM binding protein like 1 XM_017016458.1 78.3% 78.3% 0_1ins273;432G>A
11 mouse 76630 Stambpl1 STAM binding protein like 1 NM_029682.4 83.7% 87.8% (many diffs)
12 mouse 76630 Stambpl1 STAM binding protein like 1 XM_006527451.3 83.7% 87.8% (many diffs)
13 mouse 76630 Stambpl1 STAM binding protein like 1 XM_006527452.3 83.7% 87.8% (many diffs)
14 mouse 76630 Stambpl1 STAM binding protein like 1 XM_006527453.3 83.7% 87.8% (many diffs)
15 mouse 76630 Stambpl1 STAM binding protein like 1 XM_006527454.3 83.7% 87.8% (many diffs)
16 mouse 76630 Stambpl1 STAM binding protein like 1 XM_006527456.3 83.7% 87.8% (many diffs)
17 mouse 76630 Stambpl1 STAM binding protein like 1 XM_017318308.1 83.7% 87.8% (many diffs)
18 mouse 76630 Stambpl1 STAM binding protein like 1 XM_006527457.3 54.7% 56.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1329
ORF length:
1263
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgcc tgaccataca gatgtttccc taagcccaga agagcgagtc cgtgccctaa
121gcaagcttgg ttgtaatatc accatcagtg aagacatcac tccacgacgt tactttaggt
181ctggagtaga gatggagagg atggcgtctg tgtatttgga agaaggaaat ttggaaaatg
241cctttgttct ttataataaa tttataacct tatttgtaga aaagcttcct aaccatcgag
301attaccagca atgtgcagta cctgaaaagc aggatattat gaagaaactg aaggagattg
361cattcccaag gacagatgaa ttgaaaaacg accttttaaa gaaatataac gtagaatacc
421aagaatattt gcaaagcaaa aacaaatata aagctgaaat tctcaaaaaa ttggagcatc
481agagattgat agaggcagaa aggaagcgga ttgctcagat gcgccagcag cagctagaat
541cggagcagtt tctgtttttc gaagatcaac tcaagaagca agagttagcc cgaggtcaaa
601tgcgaagtca gcaaacctca gggctgtcag agcagattga tgggagcgct ttgtcctgct
661tttccacaca ccagaacaat tccttgctga atgtatttgc agatcaacct aataaaagtg
721atgcaaccaa ttatgctagc cactctcctc ctgtaaacag ggccttaaca ccagctgcta
781ctctaagtgc tgttcagaat ttagtggttg aaggactgcg atgtgtagtt ttgccagaag
841atctttgcca caaatttctg caactggcag aatcTAATAC AGTGAGAGGA ATAGAAACCT
901GTGGAATACT CTGTGGAAAA CTGACACATA ATGAATTTAC TATTACCCAT GTAATTGTGC
961CAAAGCAGTC TGCGGGACCA GACTATTGTG ACATGGAGAA TGTAGAGGAA TTATTCAATG
1021TTCAGGATCA ACATGATCTC CTCACTCTAG GATGGATCCA TACACATCCC ACTCAAACTG
1081CATTTTTATC CAGCGTTGAT CTTCACACTC ACTGTTCCTA TCAACTCATG TTGCCAGAGG
1141CCATTGCCAT TGTTTGCTCA CCAAAGCATA AAGACACTGG CATCTTCAGG CTCACCAATG
1201CTGGCATGCT TGAGGTTTCT GCTTGTAAAA AAAAGGGCTT TCATCCACAC ACCAAGGAGC
1261CCAGGCTGTT CAGTATATGC AAACATGTGT TGGTAAAAGA CATAAAAATA ATTGTGTTGG
1321ATCTGAGGTG CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
1381CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
1441TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGACTGAAT GGTCAGGTTA CATATGTTAC
1501GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)