Construct: ORF TRCN0000480130

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009258.1_s317c1
Derived from:
ccsbBroadEn_08378
DNA Barcode:
GAGCTGAACTCGCGAGCAGCCTTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RETREG1 (54463)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480130
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54463 RETREG1 reticulophagy regulator 1 NM_019000.4 99.9% 100% 393C>T
2 human 54463 RETREG1 reticulophagy regulator 1 XM_011514055.3 95.9% 95% (many diffs)
3 human 54463 RETREG1 reticulophagy regulator 1 XM_024446117.1 90.3% 90.4% 0_1ins102;291C>T
4 human 54463 RETREG1 reticulophagy regulator 1 XM_024446118.1 90.3% 90.4% 0_1ins102;291C>T
5 human 54463 RETREG1 reticulophagy regulator 1 XM_011514054.2 89.8% 89.6% 36_155del;513C>T
6 human 54463 RETREG1 reticulophagy regulator 1 NM_001034850.2 70.9% 68.5% (many diffs)
7 human 54463 RETREG1 reticulophagy regulator 1 XM_011514053.3 65.7% 64.6% (many diffs)
8 mouse 66270 Retreg1 reticulophagy regulator 1 NM_001277315.1 89% 91.5% (many diffs)
9 mouse 66270 Retreg1 reticulophagy regulator 1 NM_025459.3 89% 91.5% (many diffs)
10 mouse 66270 Retreg1 reticulophagy regulator 1 XM_006520134.3 89% 91.5% (many diffs)
11 mouse 66270 Retreg1 reticulophagy regulator 1 XM_017316720.1 89% 91.5% (many diffs)
12 mouse 66270 Retreg1 reticulophagy regulator 1 NM_001277317.1 86.7% 89.8% (many diffs)
13 mouse 66270 Retreg1 reticulophagy regulator 1 NM_001277316.1 85.4% 88.1% (many diffs)
14 mouse 66270 Retreg1 reticulophagy regulator 1 NM_001277318.1 80.8% 83.9% (many diffs)
15 mouse 66270 Retreg1 reticulophagy regulator 1 NM_001034851.2 65.7% 65.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1134
ORF length:
1068
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgcc tgaaggtgaa gactttggac caggcaaaag ctgggaagtt atcaattcca
121aaccagatga aagacccagg ctcagccact gtattgcaga atcatggatg aatttcagca
181tatttcttca agaaatgtct ctttttaaac agcagagccc tggcaagttt tgtctcctgg
241tctgtagtgt gtgcacattt tttacgatct tgggaagtta cattcctggg gttatactca
301gctatctact gttactgtgt gcatttttgt gtccattgtt taaatgtaat gatattggac
361aaaaaattta cagcaaaatt aagtcagttc tgctgaaact ggattttgga attggagaat
421atattaatca gaagaaacgt gagagatctg aagcagataa agaaaaaagt cacaaagatg
481acagtgaatt agacttttca gctctttgtc ctaagattag cctcacggtt gctgccaaag
541agttatctgt gtctgacaca gacgtctcag aggtatcctg gactgataat gggaccttca
601acctttcaga aggatacact ccacagacag acacttctga tgatcttgac cgacccagtg
661aggaagtttt ctctagagat ctttcagatt ttccatctct agaaaatggc atgggaacaa
721atgatgaaga tgaattaagc cttggtttgc ccactgagct caagagaaag aaggaacagt
781tggacagtgg tcacagacca agcaaagaga cgcaatcagc agctggtctc acccttcctc
841tgaacagtga ccaaaCCTTT CACCTGATGA GCAACCTGGC TGGGGATGTT ATCACAGCTG
901CAGTGACTGC AGCTATCAAA GACCAGTTAG AGGGTGTGCA GCAAGCACTT TCTCAGGCTG
961CCCCCATCCC AGAAGAGGAC ACAGACACTG AAGAAGGTGA TGACTTTGAA CTACTTGACC
1021AGTCAGAGCT GGATCAAATT GAGAGTGAAT TGGGACTTAC ACAAGACCAG GAAGCAGAAG
1081CACAGCAAAA TAAGAAGTCT TCAGGTTTCC TTTCAAATCT GCTGGGAGGC CATTACCCAA
1141CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG
1201ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA
1261TATCTTGTGG AAAGGACGAG AGCTGAACTC GCGAGCAGCC TTGACGCGTT AAGTCgacaa
1321tcaacctctg gattacaaaa tttgtgaaag att

Download FASTA (ORF) (Full)