Construct: ORF TRCN0000480334
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004677.1_s317c1
- Derived from:
- ccsbBroadEn_02918
- DNA Barcode:
- CCAATTAGCTTCCAACTTATCCCT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FGFR1OP2 (26127)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000480334
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26127 | FGFR1OP2 | FGFR1 oncogene partner 2 | NM_001171888.1 | 100% | 100% | |
| 2 | human | 26127 | FGFR1OP2 | FGFR1 oncogene partner 2 | NM_001171887.2 | 69.9% | 66% | (many diffs) |
| 3 | human | 26127 | FGFR1OP2 | FGFR1 oncogene partner 2 | NM_015633.3 | 67.8% | 67.5% | 512A>T;514_520delCTGCAAG;524_759del |
| 4 | human | 100335030 | LOC100335030 | FGFR1 oncogene partner 2 ps... | NR_033267.1 | 14.2% | (many diffs) | |
| 5 | mouse | 67529 | Fgfr1op2 | FGFR1 oncogene partner 2 | NM_026218.2 | 60.5% | 66.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 582
- ORF length:
- 516
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgag ttgcacaatt gagaaggcac ttgccgacgc taaagctctt gttgaaagat 121 taagagatca tgacgatgca gcagaatctc tgattgagca aaccacagct ctcaacaagc 181 gagtagaagc catgaaaCAG TATCAGGAAG AAATTCAAGA ACTTAATGAA GTCGCGAGAC 241 ATCGGCCACG GTCCACGTTA GTTATGGGAA TCCAGCAAGA AAACAGACAA ATCAGAGAGT 301 TGCAACAAGA AAACAAAGAA TTACGTACAT CTCTGGAAGA ACATCAGTCG GCCTTGGAAC 361 TTATAATGAG CAAGTACCGA GAACAAATGT TTAGATTGCT AATGGCTAGC AAAAAAGATG 421 ATCCGGGTAT AATAATGAAG TTAAAAGAGC AGCACTCCAA GATTGACATG GTACATCGTA 481 ACAAGTCCGA AGGATTCTTC CTTGATGCAT CTCGACACAT CCTTGAAGCA CCTCAACATG 541 GACTGGAGAG AAGGCACTTG GAAGCAAATC AGAATGTACA CTACCCAACT TTCTTGTACA 601 AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT 661 AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA 721 AGGACGACCA ATTAGCTTCC AACTTATCCC TACGCGTTAA GTCgacaatc aacctctgga 781 ttacaaaatt tgtgaaagat t