Construct: ORF TRCN0000480427

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002296.1_s317c1
Derived from:
ccsbBroadEn_03814
DNA Barcode:
CTCTCTTATCCGTTTTAAAGTGAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RHOJ (57381)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480427
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57381 RHOJ ras homolog family member J NM_020663.5 100% 100%
2 human 57381 RHOJ ras homolog family member J XM_006720214.4 80.9% 78.5% (many diffs)
3 human 57381 RHOJ ras homolog family member J XM_011536993.3 74.2% 74.2% 234_235ins165
4 human 57381 RHOJ ras homolog family member J XR_245709.4 18.7% 1_458del;957_1076del;1221_3418del
5 human 57381 RHOJ ras homolog family member J XR_245708.4 18.7% 1_458del;956_1085del;1231_3428del
6 mouse 80837 Rhoj ras homolog family member J NM_023275.2 87.8% 92.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
708
ORF length:
642
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa ctgcaaagag ggaactgaca gcagctgcgg ctgcaggggc aacgacgaga
121agaagatgtt gaagtgtgtg gtggtggggg acggtgccgt ggggaaaacc tgcctgctga
181tgagctacgc caacgacgcc ttcccagagg aatacgtgcc cactgtgttt gaccactatg
241cagttactgt gactgtggga ggcaagcaac acttgctcgg actgtatgac accgcgggac
301aggaggacta caaccagctg aggccactct cctaccccaa cacggatgtg tttttgatct
361gcttctctgt cgtaaaccct gcctcttacc acaatgtcca ggaggaatgg gTCCCCGAGC
421TCAAGGACTG CATGCCTCAC GTGCCTTATG TCCTCATAGG GACCCAGATT GATCTCCGTG
481ATGACCCAAA AACCTTGGCC CGTTTGCTGT ATATGAAAGA GAAACCTCTC ACTTACGAGC
541ATGGTGTGAA GCTCGCAAAA GCGATCGGAG CACAGTGCTA CTTGGAATGT TCAGCTCTGA
601CTCAGAAAGG TCTCAAAGCG GTTTTTGATG AAGCAATCCT CACCATTTTC CACCCCAAGA
661AAAAGAAGAA ACGCTGTTCT GAGGGTCACA GCTGCTGTTC AATTATCTGC CCAACTTTCT
721TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
781CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
841GTGGAAAGGA CGACTCTCTT ATCCGTTTTA AAGTGACACG CGTTAAGTCg acaatcaacc
901tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)