Construct: ORF TRCN0000480568

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006231.1_s317c1
Derived from:
ccsbBroadEn_07837
DNA Barcode:
ACATAGCAAAACTGGCTAAGTTGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SIPA1L3 (23094)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480568
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23094 SIPA1L3 signal induced proliferatio... NM_015073.3 99.9% 99.9% (many diffs)
2 human 23094 SIPA1L3 signal induced proliferatio... XM_005258671.4 99.9% 99.9% (many diffs)
3 human 23094 SIPA1L3 signal induced proliferatio... XM_011526657.2 99.9% 99.9% (many diffs)
4 human 23094 SIPA1L3 signal induced proliferatio... XM_017026518.2 99.8% 99.8% (many diffs)
5 human 23094 SIPA1L3 signal induced proliferatio... XR_001753640.2 57% (many diffs)
6 mouse 74206 Sipa1l3 signal-induced proliferatio... NM_001081028.1 86.1% 91% (many diffs)
7 mouse 74206 Sipa1l3 signal-induced proliferatio... XM_011250732.2 86.1% 91% (many diffs)
8 mouse 74206 Sipa1l3 signal-induced proliferatio... XM_006540405.2 86% 91% (many diffs)
9 mouse 74206 Sipa1l3 signal-induced proliferatio... XM_006540397.3 84% 87.9% (many diffs)
10 mouse 74206 Sipa1l3 signal-induced proliferatio... XM_006540399.3 84% 87.9% (many diffs)
11 mouse 74206 Sipa1l3 signal-induced proliferatio... XM_006540400.3 84% 87.9% (many diffs)
12 mouse 74206 Sipa1l3 signal-induced proliferatio... XM_006540401.3 84% 87.9% (many diffs)
13 mouse 74206 Sipa1l3 signal-induced proliferatio... XM_006540402.3 84% 87.9% (many diffs)
14 mouse 74206 Sipa1l3 signal-induced proliferatio... XM_006540403.2 84% 87.9% (many diffs)
15 mouse 74206 Sipa1l3 signal-induced proliferatio... XM_011250727.2 84% 87.9% (many diffs)
16 mouse 74206 Sipa1l3 signal-induced proliferatio... XM_011250728.2 84% 87.9% (many diffs)
17 mouse 74206 Sipa1l3 signal-induced proliferatio... XM_011250729.2 84% 87.9% (many diffs)
18 mouse 74206 Sipa1l3 signal-induced proliferatio... XM_011250730.2 84% 87.9% (many diffs)
19 mouse 74206 Sipa1l3 signal-induced proliferatio... XM_011250731.2 84% 87.9% (many diffs)
20 mouse 74206 Sipa1l3 signal-induced proliferatio... XM_017312346.1 84% 87.9% (many diffs)
21 mouse 74206 Sipa1l3 signal-induced proliferatio... XM_006540404.3 84% 87.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
5412
ORF length:
5343
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gaccacctat cgggccatcc ccagcgatgg tgtggacctg gcagccagct
121gtggcgccag ggtgggcgat gtcctccctg ggccacacac aggggactac gctcccttgg
181gattctgggc ccagaatggc agcatgtccc agcctcttgg cgagagcccg gccaccgcca
241ccgccaccgc caccgccacc acccgcccca gccccaccac tcccgcaatg cccaagatgg
301gcgtgcgcgc aagggtggcc gactggccgc ccaagcggga ggccctgaga gagcacagca
361acccaagccc ctcccaggac acagatggca caaaggccac caagatggcc cattccatga
421ggagcataca gaacggacag ccccccacca gcaccccggc ttcctcaggg tccaaagcct
481tccaccgact ctccaggaga aggtccaaag acgtggagtt ccaggacggg tggccccggt
541cccccggcag ggccttcctc ccccttcggc accgcagcag cagcgagatc accctcagcg
601agtgtgacgc ggaggacgcg ggggagccgc ggggggcccg gcacacgggg gcgctgcccc
661tcttccgcga gtacgggagc acctcgtcca tcgacgtgca gggcatgccc gagcagagct
721tcttcgacat cctgaacgag ttccgcagcg agcagcccga cgcccgaggg tgccaggccc
781tcaccgagct cctccgggca gatcctggcc cacacctcat ggggggcggc ggcggagcca
841agggggactc ccacaacggg cagcccgcca aggacagcct cctgccactg cagcccacga
901aggagaagga gaaggcccgg aagaaacctg cgcggggcct cggcggcggg gacacggtgg
961actcgtccat ctttcggaag ctaaggagca gcaaacccga gggggaggct gcgcgttccc
1021cgggggaggc cgacgagggc cggagccccc cggaagccag caggccgtgg gtgtgtcaga
1081agagcttcgc ccacttcgac gtgcagagca tgctgttcga cctcaacgag gcggccgcca
1141acagggtgtc ggtgtcgcag cggcggaaca ccaccacggg tgcttcggcc gcttccgccg
1201cctcggccat ggcctccctc acggcctcgc gggcccacag cctcggaggc ctggacccgg
1261ccttcaccag cacagaggac ctaaactgca aggagaactt ggagcaggac ctcggcgatg
1321acaacagcaa cgacctgctg ctcagctgcc cgcacttccg caatgagatc gggggcgagt
1381gtgagcgcaa cgtgagcttc tcccgggctt ccgtgggctc cccgagcagc ggcgagggcc
1441acctggcaga gcccgccctg agcgcctacc gcaccaacgc cagcatctcg gtgttggaag
1501ttcccaagga gcagcagcgg acgcagagtc ggccccggca gtacagcatc gagcatgtgg
1561acctgggcgc ccgctactac caggattact tcgtgggcaa agaacatgcc aattacttcg
1621gcgtggatga gaagctgggg ccagtggctg tgagcattaa gcgggagaag ctggaagacc
1681acaaggagca cggacctcag taccagtaca ggatcatctt ccggacccgc gagctcatca
1741ccctgcgggg ctccatcctg gaagatgcta cgcccacagc caccaagcat gggaccgggc
1801ggggcctgcc cttgaaggat gccctggagt atgtcatccc cgagctcaac atccactgcc
1861tgcggctggc cctcaacacc cccaaggtga cggagcaact gctgaagctc gatgagcaag
1921ggctctgccg gaagcacaag gtgggcatcc tctattgcaa ggccggccag agctccgagg
1981aggagatgta caacaatgag gaggccggcc ccgcctttga ggagttcctc tccctcatcg
2041gcgagaaggt ctgcctgaag ggcttcacca agtacgctgc ccagctggac gtcaagaccg
2101actccacggg aacccactcc ctctacacga tgtaccagga ctacgagatc atgttccatg
2161tctccaccct gctcccttac acccccaaca acaggcagca gctgctacgg aagaggcaca
2221taggaaatga catcgtgacg atcatcttcc aggagcctgg cgcgctaccg ttcaccccca
2281agaacatccg ctcccacttc cagcacgtct tcatcattgt ccgagtccac aacccctgca
2341ctgataacgt ctgttacagt atggctgtga cccgatccaa agatgctcct cctttcggcc
2401cccccatccc cagtggaacc acattccgca aatccgacgt cttcagagac ttcttgctgg
2461ccaaggtgat taacgctgag aacgccgcgc acaagtccga caagttccac accatggcca
2521ccaggacccg ccaggagtat ctcaaggacc tggccgaaaa ctgtgtctcc aacaccccca
2581tcgactccac cggcaaattc aacctcatct ccctgacctc caagaagaag gaaaagacaa
2641aagcacgggc tggcgctgag cagcacagtg caggggccat cgcctggagg gtggtggccc
2701aggactacgc ccagggggtg gaaatcgact gcattttggg aatttccaat gagtttgtgg
2761tgctcctgga cttacgcacc aaggaggtgg tgttcaactg ctactgcggg gatgtcattg
2821gctggactcc agactcctcc acactcaaaa tcttctatgg acgaggagac cacatcttcc
2881tacaggcgac agagggttct gtggaggaca taagggaaat agtgcagaga ctgaaggtga
2941tgaccagtgg ctgggagacg gtggacatga cgcttcggcg gaacgggctc gggcagctgg
3001gcttccacgt gaagtacgac ggcacggtgg ccgaggttga ggactatggg ttcgcctggc
3061aggccggcct ccggcagggc agccgactag tggagatctg caaggtggcc gtggtcacac
3121tgacccacga ccagatgatc gacctgctgc gcacctctgt cactgtgaag gtggtcatca
3181tcccgccttt tgaggacggc actccccgga ggggttggcc ggagacctac gacatgaata
3241cctcggagcc caagacggag caggaaagca tcactcctgg gggccggccc ccctaccgca
3301gcaatgctcc ctggcagtgg agcgggcccg catcccataa ctctctacca gcctccaagt
3361gggccactcc aaccactccc ggccatgccc agtccctgag ccggcccctg aagcagaccc
3421ccatagtccc cttccgggag tcccagccac tgcacagcaa gaggcctgtc agcttcccag
3481aaacccctta cacagtatca ccagcagggg ccgacagagt ccctccctac cgacagcctt
3541ctgggagctt ctccaccccc ggttcggcca cctacgtgag atacaagcca tccccagaaa
3601ggtacacggc tgccccacac cccctgctat ctcttgatcc ccacttcagc cacgatggga
3661cgtccagcgg cgactcctct tccggcggcc tgaccagcca ggagagcacc atggaacgcc
3721agaagccaga gcctttgtgg catgtgcctg cccaggccag gctctcagcc atagccggaa
3781gcagcgggaa caagcacccg tccaggcagg atgcagcagg caaagattcc cccaacaggc
3841attccaaagg agaacctcaa tactcaagtc attccagcag caacaccctc tccagcaacg
3901catccagcag ccacagcgac gaccgctggt tcgaccccct ggaccccctg gagccagagc
3961aagaccccct ctccaagggt ggctctagtg acagcggcat cgataccacc ctctacacct
4021ccagccctag ctgcatgtcc ctggccaagg ctccacggcc cgccaagcca cacaagcccc
4081ctggaagtat gggcctttgt ggcgggggtc gcgaggccgc tgggaggtcc caccacgcag
4141acaggcggcg ggaggtctcc cctgcccccg cagttgccgg ccaaagcaag ggctaccgac
4201cgaagctgta ctcctccggc tccagcaccc ccacgggact ggcggggggc agccgagacc
4261caccgaggca gcccagtgac atgggctcga gggttggcta ccccgctcag gtttacaaaa
4321ctgccagtgc agagactcct cggccctccc agctggccca gcccagcccc tttcagctct
4381ccgcctccgt ccccaagtcc ttcttctcca agcagcctgt acgcaataag cacccaacag
4441ggtggaagag aacggaggag cccccaccac ggccactccc cttcagtgac ccaaagaagc
4501aggtggacac gaacaccaaa aatgtctttg ggcaaccgag gttgagggca tccctccgag
4561acctccggtc accacggaag aactacaaat ccaccatcga ggatgacctg aagaaactca
4621tcatcatgga caacctgggg ccagagcagg agagagacac gggacagtca ccgcagaagg
4681gcctgcagcg gacgctgtcg gacgagagcc tgtgcagcgg gcgccgggag cccagcttcg
4741ccagccccgc tggcctagag ccagggctgc ccagcgacgt gctcttcacc agcacctgcg
4801ccttcccgtc cagcacgctg cctgcacgcc gccagcacca gcacccccac ccgcccgtcg
4861gccccggtgc cacccctgcc gccggcagcg gctttcccga gaagaaatcc accatctcag
4921cctcggagct ctcgctggct gatgggcggg accgccccct gcggcgcctg gaccctgggc
4981tgatgcccct gcctgacaca gctgctggcc tcgagtggtc cagcctggtg aacgcagcca
5041aggcatacga agtgcaaaga gccgtctcac tcttctcTCT GAACGACCCG GCCCTGAGCC
5101CGGACATCCC GCCTGCACAC AGTCCTGTCC ACAGCCACCT GAGCCTGGAG AGGGGACCCC
5161CGACCCCCAG GACCACCCCT ACCATGAGCG AGGAGCCACC CCTGGATCTG ACAGGCAAGG
5221TGTACCAGCT GGAGGTGATG CTGAAACAGC TGCACACTGA CCTGCAGAAG GAGAAGCAGG
5281ACAAGGTGGT GCTCCAGTCA GAGGTGGCCA GCCTGCGGCA GAACAACCAG CGGCTGCAGG
5341AGGAGTCGCA GGCCGCCAGC GAGCAGCTGC GCAAGTTTGC GGAGATCTTC TGCAGGGAGA
5401AGAAGGAGCT CTTGCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
5461ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT
5521CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGAACA TAGCAAAACT GGCTAAGTTG
5581CACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)

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