Construct: ORF TRCN0000480628

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014511.1_s317c1
Derived from:
ccsbBroadEn_08696
DNA Barcode:
TGCGGCATATCCTATAACCGCCCT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CPA6 (57094)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480628
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57094 CPA6 carboxypeptidase A6 NM_020361.5 99.9% 99.7% 518C>G
2 human 57094 CPA6 carboxypeptidase A6 XM_011517570.2 66% 65.9% 0_1ins444;74C>G
3 human 57094 CPA6 carboxypeptidase A6 XM_017013646.1 66% 65.9% 0_1ins444;74C>G
4 human 57094 CPA6 carboxypeptidase A6 XM_017013647.1 52.3% 48.6% (many diffs)
5 human 57094 CPA6 carboxypeptidase A6 XR_001745565.1 47.7% (many diffs)
6 mouse 329093 Cpa6 carboxypeptidase A6 NM_177834.4 86.2% 84.2% (many diffs)
7 mouse 329093 Cpa6 carboxypeptidase A6 NM_001289497.1 52.2% 54.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1377
ORF length:
1311
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa gtgtctcggg aagcgcaggg gccaggcagc tgctttcctg cctctttgct
121ggctcttttt gaagattctg caaccggggc acagccacct ttataacaac cgctatgctg
181gtgataaagt gataagattt attcccaaaa cagaagagga agcatatgca ctgaagaaaa
241tatcctatca acttaaggtg gacctgtggc agcccagcag tatctcctat gtatcagagg
301gaacagttac tgatgtccat atcccccaaa atggttcccg agccctgtta gccttcttac
361aggaagccaa catccagtac aaggtcctca tagaagatct tcagaaaaca ctggagaagg
421gaagcagctt gcacacccag agaaaccgaa gatccctctc tggatataat tatgaagttt
481atcactcctt agaagaaatt caaaattgga tgcatcatct gaataaaact cactcaggcc
541tcattcacat gttctctatt ggaagatcat atgagggaag atgtcttttt attttaaagc
601tgggcagacg atcacgactc aaaagagctg tttggataga ctgtggtatt catgcaagag
661aatggattgg tcctgccttt tgtcagtggt ttgtaaaaga agctcttcta acatataaga
721gtgacccagc catgagaaaa atgttgaatc atctatattt ctatatcatg cctgtgttta
781acgtcgatgg ataccatttt agttggacca atgatcgatt ttggagaaaa acaaggtcaa
841ggaactcaag gtttcgctgc cgtggagtgg atgccaatag aaactggaaa gtgaagtggt
901gtgatgaagg agcttctatg cacccttgtg atgacacata ctgtggccct tttccagaat
961ctgagccgga agtgaaggct gtagctaact tccttcGAAA ACACAGAAAG CACATTAGGG
1021CTTATCTCTC CTTTCATGCA TATGCTCAGA TGTTACTGTA TCCCTATTCT TACAAATATG
1081CAACAATTCC CAATTTTAGA TGTGTGGAAT CTGCAGCTTA TAAAGCTGTG AATGCACTTC
1141AGTCAGTATA CGGGGTACGA TACAGATATG GACCAGCCTC CACAACGTTG TATGTGAGCT
1201CTGGTAGCTC AATGGATTGG GCCTACAAAA ATGGAATACC TTATGCATTT GCTTTCGAAC
1261TACGTGACAC TGGATATTTT GGATTTTTAC TCCCAGAGAT GCTCATCAAA CCCACCTGTA
1321CAGAAACTAT GCTGGCTGTG AAAAATATCA CAATGCACCT GCTAAAGAAA TGTCCCTGCC
1381CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
1441TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
1501ATATATCTTG TGGAAAGGAC GATGCGGCAT ATCCTATAAC CGCCCTACGC GTTAAGTCga
1561caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)