Construct: ORF TRCN0000480685

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001560.1_s317c1
Derived from:
ccsbBroadEn_07247
DNA Barcode:
TCGATCTTAAGAGGCCGGTGGTAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PPFIA4 (8497)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480685
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8497 PPFIA4 PTPRF interacting protein a... XM_011510070.2 86.7% 86.1% (many diffs)
2 human 8497 PPFIA4 PTPRF interacting protein a... XM_017002609.2 60.2% 60.2% 1_1383del;2181C>A;2389C>A
3 human 8497 PPFIA4 PTPRF interacting protein a... NM_001304331.2 58% 57.9% 1_1518del;2316C>A;2524C>A
4 human 8497 PPFIA4 PTPRF interacting protein a... NM_001304332.2 57.2% 57.2% (many diffs)
5 human 8497 PPFIA4 PTPRF interacting protein a... XM_017002607.2 55% 54.6% (many diffs)
6 human 8497 PPFIA4 PTPRF interacting protein a... XM_006711586.2 53.1% 52.7% (many diffs)
7 human 8497 PPFIA4 PTPRF interacting protein a... XM_017002606.2 52.4% 52.1% (many diffs)
8 human 8497 PPFIA4 PTPRF interacting protein a... XR_001737497.2 47.2% (many diffs)
9 human 8497 PPFIA4 PTPRF interacting protein a... XR_426804.3 31.8% (many diffs)
10 human 8497 PPFIA4 PTPRF interacting protein a... XR_001737496.2 31.2% (many diffs)
11 human 8497 PPFIA4 PTPRF interacting protein a... XR_001737495.1 30.5% (many diffs)
12 human 8497 PPFIA4 PTPRF interacting protein a... XR_002957844.1 30.5% (many diffs)
13 human 8497 PPFIA4 PTPRF interacting protein a... XR_001737498.2 29.3% (many diffs)
14 human 8497 PPFIA4 PTPRF interacting protein a... XM_017002610.2 17.8% 16.7% (many diffs)
15 mouse 68507 Ppfia4 protein tyrosine phosphatas... XM_006529847.3 53.2% 56% (many diffs)
16 mouse 68507 Ppfia4 protein tyrosine phosphatas... XM_006529848.3 52.4% 55.2% (many diffs)
17 mouse 68507 Ppfia4 protein tyrosine phosphatas... NM_001144855.1 52.1% 54.7% (many diffs)
18 mouse 68507 Ppfia4 protein tyrosine phosphatas... XR_387192.1 38.3% (many diffs)
19 mouse 68507 Ppfia4 protein tyrosine phosphatas... XR_878325.2 35.5% (many diffs)
20 mouse 68507 Ppfia4 protein tyrosine phosphatas... XM_006529849.3 33.5% 35.1% (many diffs)
21 mouse 68507 Ppfia4 protein tyrosine phosphatas... XR_001785569.1 30.6% (many diffs)
22 mouse 68507 Ppfia4 protein tyrosine phosphatas... XR_387189.3 30.4% (many diffs)
23 mouse 68507 Ppfia4 protein tyrosine phosphatas... XR_387191.3 29.9% (many diffs)
24 mouse 68507 Ppfia4 protein tyrosine phosphatas... XR_001785571.1 29.6% (many diffs)
25 mouse 68507 Ppfia4 protein tyrosine phosphatas... XR_387190.2 29.6% (many diffs)
26 mouse 68507 Ppfia4 protein tyrosine phosphatas... XR_001785570.1 25.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2172
ORF length:
2103
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gggcagtgca gcagacgtgc ggttctccct gggcacaacc acacacgcac
121ccccaggcgt gcatcgccgc tactcggcat tgagggaaga gtctgccaag gactgggaga
181cttctccact gcctgggatg ctggccccgg cagctggccc tgcctttgac agtgaccctg
241agatctccga cgtggatgag gatgagccag ggggtctggt gggctctgcg gatgttgtct
301cccccagcgg ccactcagat gcccagaccc tggccatgat gctgcaggag cagctggatg
361ccatcaatga ggaaatcagg atgattcagg aagagaagga gtccacggag ctccgcgcgg
421aggagattga gacgcgtgta accagtggca gcatggaagc cctaaacctg aagcagctgc
481gcaagcgtgg ttccatcccc acctctctga cggccctgtc cctggccagc gcgtccccac
541cactcagcgg ccgctccaca cctaagctca cctcccgcag tgctgcccag gacctggacc
601gaatgggggt catgaccctg cccagtgact taagaaagca taggaggaag ctgctgtcgc
661cagtgtctcg ggaagagaac cgagaggata aagccaccat aaaatgtgag acttctcctc
721cttcctcacc caggacgctg cggctagaga agcttggcca cccagccctg agccaggaag
781aaggcaagag tgccttggag gatcagggca gcaaccccag cagcagcaac agcagccagg
841actccctgca caagggcgcc aagcgaaagg gcatcaagtc gtccattggc cgcctgtttg
901ggaagaagga gaagggcagg ctgatccagc tgagtcggga tggagccaca ggccatgttc
961tgctaacaga ctccgaattc agtatgcagg agcctatggt gcctgccaag ctggggaccc
1021aggcagagaa ggaccggcgg ctaaagaaga aacaccagct gcttgaagat gccagcagga
1081aaggaatgcc ctttgcccag tgggatggtc ctactgtggt ctcctggttg gagctctggg
1141tggggatgcc tgcctggtat gtggcagcct gccgggccaa cgtcaagagt ggtgccatca
1201tgtccgctct gtcggacaca gagatccagc gggagatcgg catcagcaat gccctgcacc
1261ggctcaagct ccgcctggcc attcaggaga tggtgtcatt gaccagcccc tctgccccac
1321ccacctccag gacttcttct gggaatgtct gggtcaccca tgaagagatg gaaactctgg
1381aaacatctac taaaacagac agtgaggagg gcagctgggc tcagaccctg gcctatgggg
1441acatgaacca tgagtggatt gggaatgaat ggctacccag cctggggctc ccgcagtacc
1501gcagctactt catggagtgc ctggtggacg cccgcatgct ggaccacctc accaagaagg
1561acctgcgggt ccacctgaag atggtggaca gcttccatcg aaccagtctt cagtatggca
1621tcatgtgtct gaagaggctg aattatgacc ggaaggagct ggagaagagg cgagaggaga
1681gccagcatga gatcaaggat gtgttagtct ggaccaacga ccaggtggtt cattgggtcc
1741agtctattgg gctccgggac tacgcaggaa acctgcatga gagtggtgtg catggagcct
1801tgctggccct ggacgagaac ttcgaccaca acacactggc cctgaTCCTC CAGATCCCCA
1861CACAGAACAC CCAGGCACGC CAAGTGATGG AAAGAGAGTT CAATAACCTG TTGGCCTTGG
1921GCACAGACCG GAAGCTGGAT GACGGGGATG ACAAGGTGTT TCGCCGCGCG CCCTCCTGGA
1981GGAAGCGCTT CCGGCCGCGG GAGCACCACG GTCGCGGCGG CATGCTCAGC GCTTCCGCGG
2041AGACCCTCCC GGCGGGCTTC CGTGTGTCCA CCCTGGGGAC CCTGCAGCCC CCACCGGCCC
2101CGCCAAAGAA GATCATGCCT GAAGCTCACT CCCACTATCT CTACGGACAC ATGCTCTCCG
2161CCTTCCGGGA CTTGCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
2221ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT
2281CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGATCG ATCTTAAGAG GCCGGTGGTA
2341AACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)