Construct: ORF TRCN0000480756

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014866.1_s317c1
Derived from:
ccsbBroadEn_06946
DNA Barcode:
ACAGGATACATGATTACATGCCCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SHMT1 (6470)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480756
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6470 SHMT1 serine hydroxymethyltransfe... NM_004169.5 99.9% 99.7% 1420C>T
2 human 6470 SHMT1 serine hydroxymethyltransfe... XM_005256767.3 99.9% 99.7% 1420C>T
3 human 6470 SHMT1 serine hydroxymethyltransfe... XM_017024957.1 99.9% 99.7% 1420C>T
4 human 6470 SHMT1 serine hydroxymethyltransfe... NM_148918.2 91.8% 91.7% 813_814ins117;1303C>T
5 human 6470 SHMT1 serine hydroxymethyltransfe... XM_017024958.1 91.8% 91.7% 813_814ins117;1303C>T
6 human 6470 SHMT1 serine hydroxymethyltransfe... XM_011523992.3 83.3% 83.2% 812_813ins240;1180C>T
7 human 6470 SHMT1 serine hydroxymethyltransfe... XM_024450887.1 83.3% 83.2% 812_813ins240;1180C>T
8 human 6470 SHMT1 serine hydroxymethyltransfe... NM_001281786.1 71.3% 71.2% 0_1ins414;1006C>T
9 human 6470 SHMT1 serine hydroxymethyltransfe... XM_024450888.1 71.3% 71.2% 0_1ins414;1006C>T
10 human 6470 SHMT1 serine hydroxymethyltransfe... XM_024450889.1 63.2% 63.1% 0_1ins414;399_400ins117;889C>T
11 human 6470 SHMT1 serine hydroxymethyltransfe... XM_024450890.1 54.7% 54.6% 0_1ins414;398_399ins240;766C>T
12 mouse 20425 Shmt1 serine hydroxymethyltransfe... NM_009171.2 84.2% 90% (many diffs)
13 mouse 20425 Shmt1 serine hydroxymethyltransfe... XM_006532644.3 84.2% 90% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1515
ORF length:
1449
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgac gatgccagtc aacggggccc acaaggatgc tgacctgtgg tcctcacatg
121acaagatgct ggcacaaccc ctcaaagaca gtgatgttga ggtttacaac atcattaaga
181aggagagtaa ccggcagagg gttggattgg agctgattgc ctcggagaat ttcgccagcc
241gagcagtttt ggaggcccta ggctcttgct taaataacaa atactctgag gggtacccgg
301gccagagata ctatggcggg actgagttta ttgatgaact ggagaccctc tgtcagaagc
361gagccctgca ggcctataag ctggacccac agtgctgggg ggtcaacgtc cagccctact
421caggctcccc tgcaaacttt gctgtgtaca ctgccctggt ggaaccccat gggcgcatca
481tgggcctgga ccttccggat gggggccacc tgacccatgg gttcatgaca gacaagaaga
541aaatctctgc cacgtccatc ttctttgaat ctatgcccta caaggtgaac ccagatactg
601gctacatcaa ctatgaccag ctggaggaga acgcacgcct cttccacccg aagctgatca
661tcgcaggaac cagctgctac tcccgaaacc tggaatatgc ccggctacgg aagattgcag
721atgagaacgg ggcgtatctc atggcggaca tggctcacat cagcgggctg gtggcggctg
781gcgtggtgcc ctccccattt gaacactgcc atgtggtgac caccaccact cacaagaccc
841tgcgaggctg ccgagctggc atgatcttct acaggaaagg agtgaaaagt gtggatccca
901agactggcaa agagattctg tacaacctgg agtctcttat caattctgct gtgttccctg
961gcctgcaggg aggtccccac aaccacgcca ttgctggggt tgctgtggca ctgaagcaag
1021ctatgactct ggaatttaaa gtttatcaac accaggtggt ggccaactgc agggctctgt
1081ctgaggccct gacggagctg ggctacaaaa tagtcacagg tggttctgac aaccattTGA
1141TCCTTGTGGA TCTCCGTTCC AAAGGCACAG ATGGTGGAAG GGCTGAGAAG GTGCTAGAAG
1201CCTGTTCTAT TGCCTGCAAC AAGAACACCT GTCCAGGTGA CAGAAGCGCT CTGCGGCCCA
1261GTGGACTGCG GCTGGGGACC CCAGCACTGA CGTCCCGTGG ACTTTTGGAA AAAGACTTCC
1321AAAAAGTAGC CCACTTTATT CACAGAGGGA TAGAGCTGAC CCTGCAGATC CAGAGCGACA
1381CTGGTGTCAG AGCCACCCTG AAAGAGTTCA AGGAGAGACT GGCAGGGGAT AAGTACCAGG
1441CGGCCGTGCA GGCTCTCCGG GAGGAGGTTG AGAGCTTCGC CTCTTTCTTC CCTCTGCCTG
1501GCCTGCCTGA CTTCTACCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC
1561CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA
1621TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA ACAGGATACA TGATTACATG
1681CCCCACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)