Construct: ORF TRCN0000480861
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004798.1_s317c1
- Derived from:
- ccsbBroadEn_02625
- DNA Barcode:
- AGTCCTACGGTTGTGAATCTGCTC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC7A9 (11136)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000480861
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11136 | SLC7A9 | solute carrier family 7 mem... | NM_001126335.2 | 100% | 100% | |
| 2 | human | 11136 | SLC7A9 | solute carrier family 7 mem... | NM_001243036.2 | 100% | 100% | |
| 3 | human | 11136 | SLC7A9 | solute carrier family 7 mem... | NM_014270.5 | 100% | 100% | |
| 4 | human | 11136 | SLC7A9 | solute carrier family 7 mem... | XM_011526402.3 | 100% | 100% | |
| 5 | human | 11136 | SLC7A9 | solute carrier family 7 mem... | XM_017026230.1 | 81.9% | 81.9% | 0_1ins264 |
| 6 | human | 11136 | SLC7A9 | solute carrier family 7 mem... | XM_024451334.1 | 54.9% | 50.6% | (many diffs) |
| 7 | human | 11136 | SLC7A9 | solute carrier family 7 mem... | XM_006722992.1 | 52.8% | 51.5% | (many diffs) |
| 8 | mouse | 30962 | Slc7a9 | solute carrier family 7 (ca... | NM_001199015.1 | 83.5% | 86.8% | (many diffs) |
| 9 | mouse | 30962 | Slc7a9 | solute carrier family 7 (ca... | NM_001199016.1 | 83.5% | 86.8% | (many diffs) |
| 10 | mouse | 30962 | Slc7a9 | solute carrier family 7 (ca... | NM_021291.3 | 83.5% | 86.8% | (many diffs) |
| 11 | mouse | 30962 | Slc7a9 | solute carrier family 7 (ca... | XM_006540044.2 | 83.5% | 86.8% | (many diffs) |
| 12 | mouse | 30962 | Slc7a9 | solute carrier family 7 (ca... | XM_006540045.2 | 83.5% | 86.8% | (many diffs) |
| 13 | mouse | 30962 | Slc7a9 | solute carrier family 7 (ca... | XM_011250591.1 | 83.5% | 86.8% | (many diffs) |
| 14 | mouse | 30962 | Slc7a9 | solute carrier family 7 (ca... | XM_011250592.2 | 83.5% | 86.8% | (many diffs) |
| 15 | mouse | 30962 | Slc7a9 | solute carrier family 7 (ca... | XM_006540046.1 | 68.8% | 71.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1527
- ORF length:
- 1461
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggg ggatactggc ctgagaaagc ggagagagga tgagaagtcg atccagagcc 121 aagagcctaa gaccaccagt ctccaaaagg agctgggcct catcagtggc atctccatca 181 tcgtgggcac catcattggc tctgggatct tcgtttcccc caagtctgtg ctcagcaaca 241 cggaagctgt ggggccctgc ctcatcatat gggcggcttg cggggtcctc gcgacgctgg 301 gtgccctgtg ctttgcggag cttggcacaa tgatcaccaa gtcaggggga gagtatccct 361 acctgatgga ggcctacggg cccatccccg cctacctctt ctcctgggcc agcctgatcg 421 tcattaagcc cacgtccttc gccatcatct gcctcagctt ctccgagtat gtgtgtgcgc 481 ccttctatgt gggctgcaag cctcctcaaa tcgttgtgaa atgcctggcc gccgccgcca 541 tcttgttcat ctcgacagtg aactcactga gcgtgcggct gggaagctac gtccagaaca 601 tcttcaccgc ggccaagctg gtgatcgtgg ccatcatcat catcagcggg ctggtgctcc 661 tggcccaagg aaacacaaag aattttgata attctttcga gggcgcccag ctgtctgtgg 721 gagccatcag cctggcgttt tacaatggac tctgggccta tgatggatgg aatcaactca 781 attacatcac agaagaactt agaaaccctt acagaaacct gcctttggcc attatcatcg 841 ggatccccct ggtgacggcg tgctacatcc tcatgaacgt gtcctacttc accgtgatga 901 ctgccaccga actcctgcag tcccaggcgg tggctgtgac atttggtgac cgtgttctct 961 atcctgcttc ttggatcgtt ccactttttg tggcattttc aaccatcggt gctgctaacg 1021 ggacctgctt cacagcgggc agacTCATTT ACGTGGCGGG CCGGGAGGGT CACATGCTCA 1081 AAGTGCTTTC TTACATCAGC GTCAGGCGCC TCACTCCAGC CCCCGCCATC ATCTTTTATG 1141 GTATCATAGC AACGATTTAT ATCATCCCTG GTGACATAAA CTCGTTAGTC AATTATTTCA 1201 GCTTTGCCGC ATGGCTGTTT TATGGCCTGA CGATTCTAGG ACTCATCGTG ATGAGATTTA 1261 CAAGGAAAGA GCTGGAAAGG CCTATCAAGG TGCCCGTAGT CATTCCCGTC TTGATGACAC 1321 TCATCTCTGT GTTTTTGGTT CTGGCTCCAA TCATCAGCAA GCCCACCTGG GAGTACCTCT 1381 ACTGTGTGCT GTTTATATTA AGCGGCCTTT TATTTTACTT CCTGTTTGTC CACTACAAGT 1441 TTGGATGGGC TCAGAAAATC TCAAAGCCGA TTACCATGCA CCTTCAGATG CTAATGGAAG 1501 TGGTCCCACC GGAGGAAGAC CCTGAGTACC CAACTTTCTT GTACAAAGTG GTTGATATCG 1561 GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT 1621 AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GAAGTCCTAC 1681 GGTTGTGAAT CTGCTCACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga 1741 aagatt