Construct: ORF TRCN0000480861

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004798.1_s317c1
Derived from:
ccsbBroadEn_02625
DNA Barcode:
AGTCCTACGGTTGTGAATCTGCTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC7A9 (11136)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480861
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11136 SLC7A9 solute carrier family 7 mem... NM_001126335.2 100% 100%
2 human 11136 SLC7A9 solute carrier family 7 mem... NM_001243036.2 100% 100%
3 human 11136 SLC7A9 solute carrier family 7 mem... NM_014270.5 100% 100%
4 human 11136 SLC7A9 solute carrier family 7 mem... XM_011526402.3 100% 100%
5 human 11136 SLC7A9 solute carrier family 7 mem... XM_017026230.1 81.9% 81.9% 0_1ins264
6 human 11136 SLC7A9 solute carrier family 7 mem... XM_024451334.1 54.9% 50.6% (many diffs)
7 human 11136 SLC7A9 solute carrier family 7 mem... XM_006722992.1 52.8% 51.5% (many diffs)
8 mouse 30962 Slc7a9 solute carrier family 7 (ca... NM_001199015.1 83.5% 86.8% (many diffs)
9 mouse 30962 Slc7a9 solute carrier family 7 (ca... NM_001199016.1 83.5% 86.8% (many diffs)
10 mouse 30962 Slc7a9 solute carrier family 7 (ca... NM_021291.3 83.5% 86.8% (many diffs)
11 mouse 30962 Slc7a9 solute carrier family 7 (ca... XM_006540044.2 83.5% 86.8% (many diffs)
12 mouse 30962 Slc7a9 solute carrier family 7 (ca... XM_006540045.2 83.5% 86.8% (many diffs)
13 mouse 30962 Slc7a9 solute carrier family 7 (ca... XM_011250591.1 83.5% 86.8% (many diffs)
14 mouse 30962 Slc7a9 solute carrier family 7 (ca... XM_011250592.2 83.5% 86.8% (many diffs)
15 mouse 30962 Slc7a9 solute carrier family 7 (ca... XM_006540046.1 68.8% 71.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1527
ORF length:
1461
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg ggatactggc ctgagaaagc ggagagagga tgagaagtcg atccagagcc
121aagagcctaa gaccaccagt ctccaaaagg agctgggcct catcagtggc atctccatca
181tcgtgggcac catcattggc tctgggatct tcgtttcccc caagtctgtg ctcagcaaca
241cggaagctgt ggggccctgc ctcatcatat gggcggcttg cggggtcctc gcgacgctgg
301gtgccctgtg ctttgcggag cttggcacaa tgatcaccaa gtcaggggga gagtatccct
361acctgatgga ggcctacggg cccatccccg cctacctctt ctcctgggcc agcctgatcg
421tcattaagcc cacgtccttc gccatcatct gcctcagctt ctccgagtat gtgtgtgcgc
481ccttctatgt gggctgcaag cctcctcaaa tcgttgtgaa atgcctggcc gccgccgcca
541tcttgttcat ctcgacagtg aactcactga gcgtgcggct gggaagctac gtccagaaca
601tcttcaccgc ggccaagctg gtgatcgtgg ccatcatcat catcagcggg ctggtgctcc
661tggcccaagg aaacacaaag aattttgata attctttcga gggcgcccag ctgtctgtgg
721gagccatcag cctggcgttt tacaatggac tctgggccta tgatggatgg aatcaactca
781attacatcac agaagaactt agaaaccctt acagaaacct gcctttggcc attatcatcg
841ggatccccct ggtgacggcg tgctacatcc tcatgaacgt gtcctacttc accgtgatga
901ctgccaccga actcctgcag tcccaggcgg tggctgtgac atttggtgac cgtgttctct
961atcctgcttc ttggatcgtt ccactttttg tggcattttc aaccatcggt gctgctaacg
1021ggacctgctt cacagcgggc agacTCATTT ACGTGGCGGG CCGGGAGGGT CACATGCTCA
1081AAGTGCTTTC TTACATCAGC GTCAGGCGCC TCACTCCAGC CCCCGCCATC ATCTTTTATG
1141GTATCATAGC AACGATTTAT ATCATCCCTG GTGACATAAA CTCGTTAGTC AATTATTTCA
1201GCTTTGCCGC ATGGCTGTTT TATGGCCTGA CGATTCTAGG ACTCATCGTG ATGAGATTTA
1261CAAGGAAAGA GCTGGAAAGG CCTATCAAGG TGCCCGTAGT CATTCCCGTC TTGATGACAC
1321TCATCTCTGT GTTTTTGGTT CTGGCTCCAA TCATCAGCAA GCCCACCTGG GAGTACCTCT
1381ACTGTGTGCT GTTTATATTA AGCGGCCTTT TATTTTACTT CCTGTTTGTC CACTACAAGT
1441TTGGATGGGC TCAGAAAATC TCAAAGCCGA TTACCATGCA CCTTCAGATG CTAATGGAAG
1501TGGTCCCACC GGAGGAAGAC CCTGAGTACC CAACTTTCTT GTACAAAGTG GTTGATATCG
1561GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
1621AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GAAGTCCTAC
1681GGTTGTGAAT CTGCTCACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga
1741aagatt

Download FASTA (ORF) (Full)