Construct: ORF TRCN0000480900

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008835.1_s317c1
Derived from:
ccsbBroadEn_02782
DNA Barcode:
CTATATCGACACCAGCGATAGCGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
BICRAL (23506)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480900
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23506 BICRAL BRD4 interacting chromatin ... NM_001318819.2 100% 100%
2 human 23506 BICRAL BRD4 interacting chromatin ... NM_015349.2 100% 100%
3 human 23506 BICRAL BRD4 interacting chromatin ... XM_024446389.1 100% 100%
4 human 23506 BICRAL BRD4 interacting chromatin ... XM_024446390.1 100% 100%
5 human 23506 BICRAL BRD4 interacting chromatin ... XR_002956272.1 95.2% 1_55del;1997_1998ins101
6 mouse 210982 Bicral BRD4 interacting chromatin ... NM_001100452.1 85.5% 87.3% (many diffs)
7 mouse 210982 Bicral BRD4 interacting chromatin ... XM_006523976.3 85.5% 87.3% (many diffs)
8 mouse 210982 Bicral BRD4 interacting chromatin ... XM_006523980.3 85.5% 87.3% (many diffs)
9 mouse 210982 Bicral BRD4 interacting chromatin ... XM_006523981.3 85.5% 87.3% (many diffs)
10 mouse 210982 Bicral BRD4 interacting chromatin ... XM_017317377.1 85.5% 87.3% (many diffs)
11 mouse 210982 Bicral BRD4 interacting chromatin ... XM_006523975.2 85.3% 87% (many diffs)
12 mouse 210982 Bicral BRD4 interacting chromatin ... XM_006523974.3 83.9% 85.6% (many diffs)
13 mouse 210982 Bicral BRD4 interacting chromatin ... XM_011246346.2 81.1% 82.7% (many diffs)
14 mouse 210982 Bicral BRD4 interacting chromatin ... XM_011246345.2 80.6% 82.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3306
ORF length:
3237
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggatgatgat gatgactcgt gtctccttga tcttattgga gacccacaag
121cattgaacta ttttctacat ggacctagta ataaatctag caatgatgac ttgactaatg
181caggatattc tgcagccaat tcaaattcaa ttttcgccaa ctctagtaat gctgatccta
241agtcatccct caaaggtgta agcaaccagc ttggagaagg gcccagtgat ggactgccac
301tttcaagtag cctccagttt cttgaagatg aactcgagtc ttctcctctt cctgatctca
361ctgaggacca acctttcgac attcttcaga aatccttgca agaggccaat atcactgaac
421agacattggc agaagaggca tatttggatg ccagtatagg ttcaagccaa cagtttgcac
481aagctcagct tcatccttct tcatcagcat cctttactca ggcttctaat gtttctaatt
541actcaggtca gacgctgcag cctatagggg tgacgcatgt gcctgttgga gcatcgtttg
601caagcaatac agtgggtgta caacatggct ttatgcaaca tgtggggatc agtgttccca
661gccagcattt gtctaatagc agtcagatta gtggttctgg tcaaatacag ttaattgggt
721catttggtaa tcatccttcc atgatgacta ttaataacct agatggatct caaatcatat
781taaagggcag cgggcagcaa gccccatcaa atgtgagtgg agggctcctg gttcatagac
841agactcctaa tggcaactcc ttgtttggga actctagttc cagtccagta gcacagcctg
901ttaccgttcc atttaacagc acaaattttc aaacatcttt acctgtgcat aacatcatca
961tacaaagggg tcttgcacca aattcaaata aagtcccaat taatatacag ccaaagccta
1021tccagatggg tcagcaaaat acatacaatg tgaacaattt gggaattcag cagcaccacg
1081tacaacaagg gatctctttt gcttctgcaa gctcacccca gggctcagta gttggtccac
1141acatgtctgt gaacattgta aaccaacaga acacaagaaa gccagtcacc tcacaggcag
1201tgagcagcac tgggggcagt attgttattc attcccccat gggccaacct cacgcacccc
1261aaagtcagtt ccttatacct acaagccttt ctgtcagttc caactcggta caccacgtcc
1321agactataaa tgggcaactt cttcaaactc aaccctctca gctcatttct ggccaagtgg
1381cctcagagca tgtcatgttg aacagaaact cttccaacat gctcaggacc aaccaaccat
1441atactggacc gatgcttaac aaccagaata ctgctgtcca cttagtgtct gggcagacat
1501ttgctgcctc tggaagtcca gtgatagcca atcatgcctc tcctcagctt gtgggtggac
1561agatgccctt gcagcaggca tccccaactg tattacacct gtcacctggg cagagcagcg
1621tttcccaagg aagacctggc ttcgccacca tgccatcggt gacaagcatg tcaggaccta
1681gtcggttccc tgctgtcagc tcagccagca ctgcccatcc tagtcttggg tctgcagttc
1741agtctggttc atcaggatca aactttacag gagatcagct gacccagcca aacaggactc
1801cagtaccagt cagtgtgtct catcgtcttc cagtttcttc ttccaagtct accagcacct
1861tcagtaacac acctggaaca ggaacccagc aacaattctt ctgccaggct cagaaaaaat
1921gtctgaatca gacttccccc atttctgctc ccaagaccac agacggcctg aggcaagcac
1981agatccctgg gctcttgagc accacactgc cagggcagga ttctggaagc aaagttatat
2041ccgcatcctt aggaaccgca caaccacagc aggaaaaagt agttggatca tctcctggcc
2101atccagctgt gcaggtggag agtcattcgg gaggacaaaa aaggcctgct gcgaaacagc
2161taacgaaagg agctttcatt ctccagcagt tgcagaggga ccaagcccac actgtgacac
2221cagacaaaag tcacttccga tcactaagtg atgcggtaca gagactgctc tcctaccacg
2281tgtgccaggg ctccatgccc actgaagaag acttgagaaa agtggacaat gaatttgaga
2341cagttgccac tcagctccta aaaaggaccc aagctatgct taacaaatac agatgcctgc
2401tcctagaaga tgccatgcga atcaatccct ctgctgagat ggtgatgatc gataggatgt
2461tcaaccagga ggaaagagct tccctgtccc gagacaagcg tttggcactt gtagaccctg
2521agggttttca ggctgatttc tgttgttcct tcaaacttga taaagctgct catgagacac
2581agtttggccg gagtgaccag catggcagta aagcaagcag ctctctgcaa ccgccagcca
2641aggcccaagg cagagaccga gccaaaaccg gtgtgacgga acccatgaat catgaccagt
2701ttcatctagt gcctaatcac atcgtggtct ctgcagaagg aaacatttct aaaaaaacag
2761aatgccttgg cagagcactg aaatttgaca aagtgggctt agtgcagtac cagagcacgt
2821ctgaagagaa ggccagccgg agagagcctc tgaaggccag tcagtgctct cccggccctg
2881aggggcaccg gaaaaccTCA TCCAGATCGG ATCATGGTAC TGAGAGCAAA CTGTCAAGCA
2941TCCTAGCAGA TTCGCACTTG GAGATGACGT GTAACAATTC CTTCCAGGAC AAAAGTCTGA
3001GGAATTCTCC AAAGAATGAA GTTTTACACA CAGACATCAT GAAAGGGTCA GGCGAACCCC
3061AGCCAGATCT CCAGCTGACA AAGAGCTTGG AAACCACATT TAAGAACATC TTGGAACTCA
3121AAAAGGCGGG ACGGCAGCCC CAGAGTGACC CCACGGTTAG CGGCTCTGTT GAGTTAGATT
3181TCCCCAACTT TTCTCCTATG GCTTCACAGG AAAACTGCCT GGAAAAGTTC ATCCCGGACC
3241ACAGTGAAGG TGTTGTAGAA ACTGACTCCA TTTTAGAAGC AGCTGTAAAT AGTATCCTAG
3301AGTGTTTGCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC
3361TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT
3421CTTGGCTTTA TATATCTTGT GGAAAGGACG ACTATATCGA CACCAGCGAT AGCGCACGCG
3481TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)