Construct: ORF TRCN0000480946
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003882.1_s317c1
- Derived from:
- ccsbBroadEn_12340
- DNA Barcode:
- CGGGCTCAATCCGAGCGGCAACGA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF286A (57335)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000480946
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57335 | ZNF286A | zinc finger protein 286A | NM_001288644.2 | 100% | 100% | |
| 2 | human | 57335 | ZNF286A | zinc finger protein 286A | NM_001288645.2 | 100% | 100% | |
| 3 | human | 57335 | ZNF286A | zinc finger protein 286A | NM_001288646.2 | 100% | 100% | |
| 4 | human | 57335 | ZNF286A | zinc finger protein 286A | NM_001288647.2 | 100% | 100% | |
| 5 | human | 57335 | ZNF286A | zinc finger protein 286A | NM_001288648.2 | 100% | 100% | |
| 6 | human | 57335 | ZNF286A | zinc finger protein 286A | NM_001288649.2 | 100% | 100% | |
| 7 | human | 57335 | ZNF286A | zinc finger protein 286A | NM_001369436.1 | 100% | 100% | |
| 8 | human | 57335 | ZNF286A | zinc finger protein 286A | NM_001369437.1 | 100% | 100% | |
| 9 | human | 57335 | ZNF286A | zinc finger protein 286A | NM_001369438.1 | 100% | 100% | |
| 10 | human | 57335 | ZNF286A | zinc finger protein 286A | NM_001369440.1 | 87% | 87% | 1_183del |
| 11 | human | 57335 | ZNF286A | zinc finger protein 286A | NM_001288643.2 | 80% | 80% | 1_306del |
| 12 | human | 57335 | ZNF286A | zinc finger protein 286A | NM_001130842.2 | 78.5% | 78.5% | 1_336del |
| 13 | human | 57335 | ZNF286A | zinc finger protein 286A | NM_020652.3 | 78.5% | 78.5% | 1_336del |
| 14 | human | 57335 | ZNF286A | zinc finger protein 286A | NM_001288642.2 | 72.5% | 72.5% | 1_465del |
| 15 | human | 729288 | ZNF286B | zinc finger protein 286B (p... | NR_160540.1 | 23.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1296
- ORF length:
- 1227
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggagactaga ccacagagca aggattcaac ttcagtgcaa gatttttcca 121 aagcagaatc atgcaaagtt gcaataatag acagactgac acggaatagt gtctatgact 181 ctaacttgga agcagccctt gaatgtgaaa attggttaga gaatcagcaa ggaaatcagg 241 agagacattt gagagaaatg ttcactcaca tgaattcact ctctgaggaa acagaccata 301 agcatgatgt atactggaaa agcttcaatc agaaatctgt ccttatcact gaagacagag 361 ttcccaaagg atcttatgcc ttccatacac ttgaaaaaag cttgaaacaa aaatcaaact 421 taatgaaaaa gcagagaact tataaagaga aaaaacctca taaatgtaat gattgtggtg 481 aactcttcac ctaccattca gtgcttattc gacaccagag agtccatact ggagagaaac 541 cctatacctg caatgaatgt gggaaatctt ttagccacag agctaattta actaaacacc 601 agagaactca tactagaatt ctctttgaat gcagtgaatg caagaaaacc ttcacagaaa 661 gctcatccct tgcaacacat cagagaattc acgttggaga gagaccttat gaatgcaatg 721 aatgtgggaa aggttttaat cgaagtacac atcttgtgca gcatcagttg attcatactg 781 gagtgaagcc ttatgaatgt aatgaatgtg ataaagcttt tattcattca tcagcactca 841 ttaaacatca aagaactcat actggagaga aaccttataa atgtcaagaa tgtgggaaag 901 cctttagcca ttgctcatcc ctaactaagc aTCAGAGAGT TCATACTGGA GAAAAGCCAT 961 ATGAATGCAG TGAATGTGGA AAAACTTTTA GTCAGAGCAC ACATCTTGTT CAACATCAGA 1021 GAATTCACAC TGGAGAGAAA CCCTATGAGT GTAATGAATG TGGGAAAACC TTCAGCCGGA 1081 GCTCCAATTT TGCTAAACAT CAAAGAATTC ATATTGGAAA GAAACCGTAC AAATGTAGCG 1141 AGTGTGGAAA AGCCTTCATT CATTCATCAG CTCTCATTCA ACATCAGAGA ACTCATACCG 1201 GAGAGAAACC CTTTAGATGT AATGAGTGTG GGAAAAGCTT TAAGTGCAGT TCATCTCTCA 1261 TCAGACATCA AAGAGTTCAC ACTGAAGAGC AACCCTTGCC AACTTTCTTG TACAAAGTGG 1321 TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA 1381 CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG 1441 ACGGGCTCAA TCCGAGCGGC AACGAACGCG TTAAGTCgac aatcaacctc tggattacaa 1501 aatttgtgaa agatt