Construct: ORF TRCN0000481078

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011910.2_s317c1
Derived from:
ccsbBroadEn_02517
DNA Barcode:
GTATTACCAGGTGCGATTAGCTGT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RFPL2 (10739)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000481078
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10739 RFPL2 ret finger protein like 2 NM_001159545.2 100% 100%
2 human 10739 RFPL2 ret finger protein like 2 NM_001159546.2 100% 100%
3 human 10739 RFPL2 ret finger protein like 2 NM_001364984.1 100% 100%
4 human 10739 RFPL2 ret finger protein like 2 NM_001364985.1 100% 100%
5 human 10738 RFPL3 ret finger protein like 3 NM_006604.2 97.4% 94.4% (many diffs)
6 human 5988 RFPL1 ret finger protein like 1 XM_011530298.3 95.4% 90.6% (many diffs)
7 human 5988 RFPL1 ret finger protein like 1 XM_011530299.3 95.4% 90.6% (many diffs)
8 human 5988 RFPL1 ret finger protein like 1 XM_017028900.2 95.4% 90.6% (many diffs)
9 human 5988 RFPL1 ret finger protein like 1 XM_017028902.2 95.4% 90.6% (many diffs)
10 human 10739 RFPL2 ret finger protein like 2 NM_001364982.1 92.9% 92.9% 1_66del
11 human 10738 RFPL3 ret finger protein like 3 NM_001098535.1 88.5% 85.8% (many diffs)
12 human 5988 RFPL1 ret finger protein like 1 NM_021026.2 86.7% 82.3% (many diffs)
13 human 10739 RFPL2 ret finger protein like 2 NM_001098527.3 76.1% 76.1% 1_270del
14 human 10739 RFPL2 ret finger protein like 2 XM_011529832.2 76.1% 76.1% 1_270del
15 human 10739 RFPL2 ret finger protein like 2 NM_001364983.1 69.2% 69.2% 1_384del
16 human 10739 RFPL2 ret finger protein like 2 NM_001364986.1 69.2% 69.2% 1_384del
17 human 10739 RFPL2 ret finger protein like 2 XM_011529826.2 69.2% 69.2% 1_384del
18 human 10739 RFPL2 ret finger protein like 2 XM_011529827.3 69.2% 69.2% 1_384del
19 human 10739 RFPL2 ret finger protein like 2 XM_011529828.2 69.2% 69.2% 1_384del
20 human 10738 RFPL3 ret finger protein like 3 XM_017028534.1 41.3% 33.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
930
ORF length:
864
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc tgcactcttc caagaagcaa gcagctgtcc cgtctgctca gactatctgg
121aaaaaccaat gtccctggag tgtggatgcg ccgtctgcct caagtgcatt aattcactgc
181agaaggagcc ccatggggag gatctacttt gctgttgctc ttccatggtc tctcggaaga
241acaaaatcag gcgcaatcgg cagctagaga ggctggcttc ccacatcaag gaactggagc
301ccaagctgaa gaagattctg cagatgaacc caaggatgcg gaagttccaa gtggatatga
361ccttggatgc caacacagcc aacaacttcc tcctcatttc tgacgacctc aggagcgtcc
421gaagtgggcg catcagacag aatcggcaag accttgccga gagatttgac gtgtccgttt
481gcaTCCTGGG CTCCCCTCGC TTTACCTGTG GCCGCCACTG CTGGGAGGTG GACGTGGGAA
541CAAGCACAGA ATGGGACCTG GGAGTCTGCA GAGAATCTGT TCACCGCAAA GGGAGGATCC
601AGCTGACCAC AGAGCTTGGA TTCTGGACTG TGAGTTTGAG GGATGGAGGC CGCCTCTCTG
661CCACCACGGT GCCGCTGACT TTCCTCTTCG TAGACCGCAA GTTACAGCGA GTGGGGATTT
721TTCTGGATAT GGGCATGCAG AACGTTTCCT TTTTTGATGC TGAAAGTGGT TCCCATGTCT
781ATACATTCAG GAGCGTATCT GCTGAGGAGC CATTGCGCCC ATTTTTGGCT CCTTCAGTTC
841CACCTAATGG TGATCAAGGT GTCTTGAGCA TCTGTCCTTT GATGAACTCA GGCACTACTG
901ATGCTCCAGT CCGTCCTGGG GAGGCCAAAT ACCCAACTTT CTTGTACAAA GTGGTTGATA
961TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
1021CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGAGTATT
1081ACCAGGTGCG ATTAGCTGTA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
1141tgaaagatt

Download FASTA (ORF) (Full)