Construct: ORF TRCN0000481251

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007473.1_s317c1
Derived from:
ccsbBroadEn_10401
DNA Barcode:
CGGCAAGATACATCCAGTGTCTTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CEP170P1 (645455)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000481251
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 645455 CEP170P1 centrosomal protein 170 pse... NR_003135.3 81% 1_99del;979_1085del
2 human 9859 CEP170 centrosomal protein 170 XM_017002951.2 21.7% 21.6% (many diffs)
3 human 9859 CEP170 centrosomal protein 170 XM_017002950.2 20.6% 20.5% (many diffs)
4 human 9859 CEP170 centrosomal protein 170 XM_017002949.2 20.2% 20.1% (many diffs)
5 human 9859 CEP170 centrosomal protein 170 XM_017002946.2 20.2% 20.1% (many diffs)
6 human 9859 CEP170 centrosomal protein 170 XM_017002947.2 20% 19.9% (many diffs)
7 human 9859 CEP170 centrosomal protein 170 XM_017002948.2 20% 19.9% (many diffs)
8 human 9859 CEP170 centrosomal protein 170 NM_001042405.1 19.9% 19.7% (many diffs)
9 human 9859 CEP170 centrosomal protein 170 XM_017002945.2 19.7% 19.6% (many diffs)
10 human 9859 CEP170 centrosomal protein 170 NM_001042404.1 19.5% 19.4% (many diffs)
11 human 9859 CEP170 centrosomal protein 170 XM_011544344.3 19.4% 19.3% (many diffs)
12 human 9859 CEP170 centrosomal protein 170 XM_017002944.2 19.4% 19.3% (many diffs)
13 human 9859 CEP170 centrosomal protein 170 XM_011544343.3 19.4% 19.3% (many diffs)
14 human 9859 CEP170 centrosomal protein 170 XM_017002942.2 18.9% 18.8% (many diffs)
15 human 9859 CEP170 centrosomal protein 170 XM_017002943.2 18.9% 18.8% (many diffs)
16 human 9859 CEP170 centrosomal protein 170 XM_017002938.2 18.7% 18.6% (many diffs)
17 human 9859 CEP170 centrosomal protein 170 XM_017002937.2 18.6% 18.5% (many diffs)
18 human 9859 CEP170 centrosomal protein 170 XM_017002941.2 18.6% 18.5% (many diffs)
19 human 9859 CEP170 centrosomal protein 170 XM_017002935.2 18.5% 18.4% (many diffs)
20 human 9859 CEP170 centrosomal protein 170 XM_017002939.2 18.5% 18.4% (many diffs)
21 human 9859 CEP170 centrosomal protein 170 XM_017002940.2 18.5% 18.4% (many diffs)
22 human 9859 CEP170 centrosomal protein 170 NM_014812.3 18.3% 18.2% (many diffs)
23 human 9859 CEP170 centrosomal protein 170 XM_017002936.2 18.3% 18.2% (many diffs)
24 human 9859 CEP170 centrosomal protein 170 XM_011544342.3 18.2% 18.1% (many diffs)
25 human 9859 CEP170 centrosomal protein 170 XM_011544341.3 18.2% 18.1% (many diffs)
26 human 9859 CEP170 centrosomal protein 170 XM_017002933.2 18.2% 18.1% (many diffs)
27 human 9859 CEP170 centrosomal protein 170 XM_017002934.2 18.2% 18.1% (many diffs)
28 human 9859 CEP170 centrosomal protein 170 XM_011544340.3 18% 17.9% (many diffs)
29 human 9859 CEP170 centrosomal protein 170 XM_011544339.3 17.9% 17.8% (many diffs)
30 human 9859 CEP170 centrosomal protein 170 XM_011544338.3 17.8% 17.7% (many diffs)
31 human 9859 CEP170 centrosomal protein 170 XM_011544337.3 17.6% 17.5% (many diffs)
32 human 9859 CEP170 centrosomal protein 170 XM_006711843.4 17.5% 17.4% (many diffs)
33 human 9859 CEP170 centrosomal protein 170 XM_011544334.3 17.5% 17.4% (many diffs)
34 human 9859 CEP170 centrosomal protein 170 XM_011544335.3 17.5% 17.4% (many diffs)
35 human 9859 CEP170 centrosomal protein 170 XM_011544336.2 17.5% 17.4% (many diffs)
36 human 9859 CEP170 centrosomal protein 170 XM_017002932.1 17.5% 17.4% (many diffs)
37 mouse 545389 Cep170 centrosomal protein 170 NM_001368872.1 18.5% 19.1% (many diffs)
38 mouse 545389 Cep170 centrosomal protein 170 XM_017321736.2 18.3% 18.9% (many diffs)
39 mouse 545389 Cep170 centrosomal protein 170 XM_006496948.4 18.1% 18.8% (many diffs)
40 mouse 545389 Cep170 centrosomal protein 170 XM_006496947.4 18% 18.6% (many diffs)
41 mouse 545389 Cep170 centrosomal protein 170 XM_006496945.4 17.7% 18.3% (many diffs)
42 mouse 545389 Cep170 centrosomal protein 170 NM_001368873.1 17.5% 18.1% (many diffs)
43 mouse 545389 Cep170 centrosomal protein 170 XM_006496944.4 17.5% 18.1% (many diffs)
44 mouse 545389 Cep170 centrosomal protein 170 XM_030255572.1 17.1% 17.7% (many diffs)
45 mouse 545389 Cep170 centrosomal protein 170 XM_006496943.4 17% 17.6% (many diffs)
46 mouse 545389 Cep170 centrosomal protein 170 XM_030255571.1 16.9% 17.5% (many diffs)
47 mouse 545389 Cep170 centrosomal protein 170 XM_030255570.1 16.8% 17.4% (many diffs)
48 mouse 545389 Cep170 centrosomal protein 170 XM_030255569.1 16.7% 17.3% (many diffs)
49 mouse 545389 Cep170 centrosomal protein 170 NM_001099637.2 16.6% 17.1% (many diffs)
50 mouse 545389 Cep170 centrosomal protein 170 XM_006496939.4 16.6% 17.1% (many diffs)
51 mouse 545389 Cep170 centrosomal protein 170 XM_006496940.4 16.6% 17.1% (many diffs)
52 mouse 545389 Cep170 centrosomal protein 170 XM_006496937.4 16.4% 17% (many diffs)
53 mouse 545389 Cep170 centrosomal protein 170 XM_030255566.1 16.4% 17% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
945
ORF length:
879
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgcc tactagttct tcattcaaac accggattaa agagcaggaa gactacatcc
121gagattggac tgctcatcga gaagagatag ccaggatcag ccaagatctt gctctcattg
181ctcgggagat caacgatgta gcaggagaga tagattcagt gacttcatca ggcactgccc
241ctagtaccac attggttgat cgtgtttttg atgaaagcct caacttccaa aagattcctc
301cattagttca ttccaaaaca ccagaaggaa acaacggtcg atctggtgat ccaagacctc
361aagcagcaga gcctcccgat cacttaacaa ttacaaggcg gagaacctgg agcagggatg
421aagtcatggg agataatctg ctgctgtcat ccgtctttca gttctctaag aagataagac
481aatCTATAGA TAAGACAGCT GGAAAGATCA GAATATTATT TAAAGACAAA GATCGGAATT
541GGGATGACAT AGAAAGCAAA TTAAGAGCCG AAAGTGAAGT CCCTATTGTG AAAACCTCGA
601GCATGGAGAT TTCTTCTATC TTACAGGAAC TGAAAAGAGT AGAAAAGCAG CTACAAGCAA
661TCAATGCTAT GATTGATCCT GATGGAACTT TGGAGGCTCT GAACAACATG GGATTTCCCA
721GTGCTATGTT GCCATCTCCA CCGAAACAGA AGTCCAGCCC TGTGAATAAC CACCACAGCC
781CGGGTCAGAC ACCAACACTT GGCCAACCAG AAGCTAGGGC TCTTCATCCT GCTGCTGTTT
841CAGCCGCAGC TGAATTTGAG AATGCTGAAT CTGAGGCTGA TTTCAGTATA CATTTCAATA
901GAGTCAACCC TGATGGGGAA GAGGAAGATG TTACAGTACA TAAATGCCCA ACTTTCTTGT
961ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
1021AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
1081GAAAGGACGA CGGCAAGATA CATCCAGTGT CTTCACGCGT TAAGTCgaca atcaacctct
1141ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)