Construct: ORF TRCN0000481379
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014182.1_s317c1
- Derived from:
- ccsbBroadEn_03915
- DNA Barcode:
- GGCTGCTAGGCGCTCCTTCTGTTC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RBM26 (64062)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000481379
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64062 | RBM26 | RNA binding motif protein 26 | NM_022118.5 | 100% | 100% | |
| 2 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535193.3 | 100% | 100% | |
| 3 | human | 64062 | RBM26 | RNA binding motif protein 26 | NM_001286632.1 | 99.6% | 99.6% | 1853_1861delAGGTAATGC |
| 4 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535192.3 | 99.6% | 99.6% | 1853_1861delAGGTAATGC |
| 5 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020699.2 | 99.1% | 99.1% | 1274_1288del;1868_1876delAGGTAATGC |
| 6 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020694.2 | 98.6% | 98.6% | 1132_1161del;1883_1891delAGGTAATGC |
| 7 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535191.3 | 98.4% | 98.4% | 1132_1161del;1304_1318del |
| 8 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020693.2 | 98.1% | 98.1% | 1132_1161del;1304_1318del;1898_1906delAGGTAATGC |
| 9 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020692.2 | 97.6% | 97.6% | 1976_2047del |
| 10 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020700.2 | 97.5% | 96.3% | (many diffs) |
| 11 | human | 64062 | RBM26 | RNA binding motif protein 26 | NM_001366735.2 | 97.3% | 97.3% | 1853_1861delAGGTAATGC;1985_2056del |
| 12 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535188.3 | 97.3% | 97.3% | 1853_1861delAGGTAATGC;1985_2056del |
| 13 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020698.2 | 97.2% | 96% | (many diffs) |
| 14 | human | 64062 | RBM26 | RNA binding motif protein 26 | NM_001286631.1 | 97.1% | 97.1% | 1274_1288del;1991_2062del |
| 15 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535187.3 | 97.1% | 97.1% | 1274_1288del;1991_2062del |
| 16 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535185.3 | 96.8% | 96.8% | 1274_1288del;1868_1876delAGGTAATGC;2000_2071del |
| 17 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020691.2 | 96.6% | 96.6% | 1132_1161del;2006_2077del |
| 18 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020695.2 | 96.6% | 95.4% | (many diffs) |
| 19 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020690.2 | 96.3% | 96.3% | 1132_1161del;1883_1891delAGGTAATGC;2015_2086del |
| 20 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020696.2 | 96.3% | 95.1% | (many diffs) |
| 21 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535183.3 | 96.1% | 96.1% | 1132_1161del;1304_1318del;2021_2092del |
| 22 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535190.2 | 96.1% | 94.9% | (many diffs) |
| 23 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_005266491.5 | 95.8% | 95.8% | (many diffs) |
| 24 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535180.3 | 95.8% | 95.8% | (many diffs) |
| 25 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020688.2 | 95.8% | 95.8% | (many diffs) |
| 26 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_024449393.1 | 95.8% | 95.8% | (many diffs) |
| 27 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535189.2 | 95.8% | 94.6% | (many diffs) |
| 28 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535186.3 | 94.9% | 93.8% | (many diffs) |
| 29 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535184.2 | 94.5% | 93.3% | (many diffs) |
| 30 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020689.2 | 94.3% | 93.1% | (many diffs) |
| 31 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535182.2 | 94% | 92.9% | (many diffs) |
| 32 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020697.2 | 93.9% | 93.6% | (many diffs) |
| 33 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535181.2 | 93.8% | 92.7% | (many diffs) |
| 34 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535179.2 | 93.6% | 92.4% | (many diffs) |
| 35 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_005266497.2 | 93.5% | 93.2% | (many diffs) |
| 36 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_006719857.2 | 93.5% | 93.1% | (many diffs) |
| 37 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020703.2 | 88.1% | 87.4% | (many diffs) |
| 38 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020701.2 | 87.3% | 86.5% | (many diffs) |
| 39 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_017020702.2 | 87.3% | 86.5% | (many diffs) |
| 40 | human | 64062 | RBM26 | RNA binding motif protein 26 | XM_011535195.1 | 65.7% | 64.6% | (many diffs) |
| 41 | mouse | 74213 | Rbm26 | RNA binding motif protein 26 | NM_134077.4 | 91.3% | 96.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 3009
- ORF length:
- 2940
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggtttctaaa atgatcattg aaaacttcga ggcactcaag tcctggctca 121 gcaagactct cgagcccatc tgtgatgcag atccatccgc cctagcaaaa tatgttctgg 181 ctttggtaaa gaaagacaaa agtgaaaaag agttaaaggc attatgtatt gatcagctgg 241 atgtatttct tcagaaagag acacagatat ttgtggaaaa actttttgat gctgtgaata 301 caaagagtta cctacctcct ccagagcagc catcatcagg aagcctgaag gtagaatttt 361 ttccacacca agaaaaagat ataaagaagg aagagatcac taaggaggaa gagcgagaga 421 agaagttttc tagaaggcta aatcacagtc ctccccagtc aagctcccga tacagggaaa 481 atagaagccg tgatgagagg aaaaaagatg atcgttctcg caaaagagat tatgatcgaa 541 accctcctcg aagagattca tacagagacc ggtacaatag aagacgaggg cggagtcgca 601 gttatagcag gagtcgaagt cgaagttgga gtaaagagag gcttcgtgag agggacagag 661 atagaagcag gactagaagc agaagcagaa cacgaagcag ggaaagggat ctggtaaaac 721 ctaaatatga cctggataga acagatccat tagaaaataa ttatactcca gtctcttcgg 781 tacctagtat ttcatctggc cactaccctg tacctacttt gagcagcact attacagtaa 841 ttgctcctac tcatcatgga aacaacacta ccgaaagttg gtctgaattt catgaagacc 901 aagtggacca taactcttac gtaagaccac ccatgccaaa gaaacggtgt agagactatg 961 atgaaaaggg tttttgtatg agaggagaca tgtgtccttt tgatcatgga agtgatccag 1021 tagttgtaga agatgtgaat cttcctggta tgctgccttt cccagcacag cctcctgttg 1081 ttgaaggacc acctcctcct ggactccccc cacctccacc aattcttaca cccccacctg 1141 tgaatctcag gcccccagta ccaccgccag gtccattgcc acccagtctc ccacctgtta 1201 caggaccacc acctccactt cctcctttgc agccatctgg catggatgct cctccaaact 1261 ctgcaaccag ttctgttcct actgtagtaa caactggcat tcatcaccag cctcctcctg 1321 ctccaccctc tctttttact gcagatacat atgacacaga tggctacaat cctgaagccc 1381 caagcataac aaacacttcc agacctatgt atagacacag agtgcatgca caaaggccca 1441 acttgatagg actaacatca ggggatatgg atttgccacc cagagaaaag cctcccaata 1501 aaagcagtat gaggatagta gtggactcag aatcaaggaa aagaaccatt ggttctggag 1561 agcctggagt tcctacaaag aagacttggt ttgataaacc aaattttaat agaacaaaca 1621 gcccaggctt tcagaagaag gttcaatttg gaaatgaaaa taccaagctt gaacttagaa 1681 aagttcctcc agaattaaat aatatcagca aacttaatga acattttagt cgatttggaa 1741 ccttggttaa cttacaggtt gcttataatg gtgatcctga aggtgcccta atccaatttg 1801 caacatacga agaagcaaag aaagcaatat caagtacgga agcagtatta aacaatcgct 1861 ttattaaggt ttattggcac agagaaggaa gcacccaaca gttacaaact acttctccaa 1921 agcctttagt ccagcagccc attttgcctg ttgtgaagca gtcagtcaaa gagcggctgg 1981 gtccagtacc ttcaagtact attgaacctg cagaagccca gagtgcctct tcagaccttc 2041 ctcaggtgtt gtctacatct actggcctaa caaaaacagt gtataatcca gctgctttga 2101 aggctgcaca gaaaacctta cttgtttcca cctctgcagt tgataataat gaagcacaga 2161 aaaaaaaaca ggaggcattg aaacttcagc aggatgtaag gaaaaggaaa caagaaattt 2221 tagaaaagca cattgaaaca cagaagatgt taatttcaaa actggagaaa aacaaaacaa 2281 tgaagtctga agataaagca gaaataatga aaactttaga ggttttgaca aaaaatatta 2341 ccaagttgaa agatgaggtc aaagctgctt ctcctggacg ctgtcttcca aaaagtataa 2401 aaaccaagac tcagatgcag aaggaattac ttgacacaga actggattta tataagaaga 2461 tgcaggctgg agaagaagtc actgaactta ggagaaagta tacagaatta cagctggaag 2521 ctgccaaacg agggattctt tcatctggTC GGGGCAGAGG AATTCATTCA AGAGGTCGAG 2581 GTGCAGTTCA TGGCCGAGGC AGGGGGCGAG GGCGAGGGCG AGGTGTGCCT GGTCATGCTG 2641 TGGTGGATCA CCGTCCCAGG GCATTGGAGA TTTCTGCATT TACGGAGAGC GATAGAGAAG 2701 ATCTTCTTCC TCATTTTGCG CAATATGGTG AAATTGAAGA TTGTCAGATT GATGATTCCT 2761 CACTTCATGC AGTAATTACA TTCAAGACAA GAGCAGAAGC TGAAGCAGCT GCAGTTCATG 2821 GAGCTCGTTT CAAAGGGCAA GATCTAAAAC TGGCATGGAA TAAACCAGTA ACTAATATTT 2881 CAGCTGTTGA AACAGAAGAA GTTGAGCCTG ATGAAGAAGA ATTTCAGGAA GAGTCTTTGG 2941 TGGATGACTC ATTACTTCAA GATGATGATG AAGAAGAAGA GGACAATGAA TCTCGTTCTT 3001 GGAGAAGATT GCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC 3061 CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA 3121 TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAGGCTGC TAGGCGCTCC TTCTGTTCAC 3181 GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt