Construct: ORF TRCN0000481423

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015809.1_s317c1
Derived from:
ccsbBroadEn_01666
DNA Barcode:
ACACATGTGATGGCATCCCATCCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TGFBR1 (7046)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000481423
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7046 TGFBR1 transforming growth factor ... NM_001130916.3 100% 100%
2 human 7046 TGFBR1 transforming growth factor ... NM_004612.4 84.6% 84.6% 343_573del
3 human 7046 TGFBR1 transforming growth factor ... NM_001306210.2 84% 84% 343_585del
4 human 7046 TGFBR1 transforming growth factor ... XM_011518950.2 83.8% 83.8% 0_1ins207
5 human 7046 TGFBR1 transforming growth factor ... XM_011518949.2 70.9% 70.9% 0_1ins207;136_366del
6 human 7046 TGFBR1 transforming growth factor ... XM_024447658.1 70.9% 70.9% 0_1ins207;136_366del
7 human 7046 TGFBR1 transforming growth factor ... XM_011518948.2 70.4% 70.4% 0_1ins207;136_378del
8 human 7046 TGFBR1 transforming growth factor ... XM_017015063.1 70.4% 70.4% 0_1ins207;136_378del
9 mouse 21812 Tgfbr1 transforming growth factor,... NM_001312868.1 76.8% 81.9% (many diffs)
10 mouse 21812 Tgfbr1 transforming growth factor,... NM_009370.3 76.2% 81.2% (many diffs)
11 mouse 21812 Tgfbr1 transforming growth factor,... NM_001312869.1 73.3% 72.3% (many diffs)
12 mouse 21812 Tgfbr1 transforming growth factor,... XM_017320103.1 64.8% 70.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1344
ORF length:
1278
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga ggcggcggtc gctgctccgc gtccccggct gctcctcctc gtgctggcgg
121cggcggcggc ggcggcggcg gcgctgctcc cgggggcgac ggcgttacag tgtttctgcc
181acctctgtac aaaagacaat tttacttgtg tgacagatgg gctctgcttt gtctctgtca
241cagagaccac agacaaagtt atacacaaca gcatgtgtat agctgaaatt gacttaattc
301ctcgagatag gccgtttgta tgtgcaccct cttcaaaaac tgggtctgtg actacaacat
361attgctgcaa tcaggaccat tgcaataaaa tagaacttcc aactactggt ttaccattgc
421ttgttcagag aacaattgcg agaactattg tgttacaaga aagcattggc aaaggtcgat
481ttggagaagt ttggagagga aagtggcggg gagaagaagt tgctgttaag atattctcct
541ctagagaaga acgttcgtgg ttccgtgagg cagagattta tcaaactgta atgttacgtc
601atgaaaacat cctgggattt atagcagcag acaataaaga caatggtact tggactcagc
661tctggttggt gtcagattat catgagcatg gatccctttt tgattactta aacagataca
721cagttactgt ggaaggaatg ataaaacttg ctctgtccac ggcgagcggt cttgcccatc
781ttcacatgga gattgttggt acccaaggaa agccagccat tgctcataga gatttgaaat
841caaagaataT CTTGGTAAAG AAGAATGGAA CTTGCTGTAT TGCAGACTTA GGACTGGCAG
901TAAGACATGA TTCAGCCACA GATACCATTG ATATTGCTCC AAACCACAGA GTGGGAACAA
961AAAGGTACAT GGCCCCTGAA GTTCTCGATG ATTCCATAAA TATGAAACAT TTTGAATCCT
1021TCAAACGTGC TGACATCTAT GCAATGGGCT TAGTATTCTG GGAAATTGCT CGACGATGTT
1081CCATTGGTGG AATTCATGAA GATTACCAAC TGCCTTATTA TGATCTTGTA CCTTCTGACC
1141CATCAGTTGA AGAAATGAGA AAAGTTGTTT GTGAACAGAA GTTAAGGCCA AATATCCCAA
1201ACAGATGGCA GAGCTGTGAA GCCTTGAGAG TAATGGCTAA AATTATGAGA GAATGTTGGT
1261ATGCCAATGG AGCAGCTAGG CTTACAGCAT TGCGGATTAA GAAAACATTA TCGCAACTCA
1321GTCAACAGGA AGGCATCAAA ATGTACCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA
1381AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC
1441TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAA CACATGTGAT
1501GGCATCCCAT CCCACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag
1561att

Download FASTA (ORF) (Full)