Construct: ORF TRCN0000481554

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001790.2_s317c1
Derived from:
ccsbBroadEn_04914
DNA Barcode:
CGAAGTCCTTGCTTCCGCCAACTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RALYL (138046)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000481554
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 138046 RALYL RALY RNA binding protein like NM_001100392.2 100% 100%
2 human 138046 RALYL RALY RNA binding protein like NM_001100393.2 100% 100%
3 human 138046 RALYL RALY RNA binding protein like NM_001354305.1 100% 100%
4 human 138046 RALYL RALY RNA binding protein like NM_001354306.1 100% 100%
5 human 138046 RALYL RALY RNA binding protein like NM_001354308.1 100% 100%
6 human 138046 RALYL RALY RNA binding protein like NM_001354316.1 100% 100%
7 human 138046 RALYL RALY RNA binding protein like NM_001354320.1 100% 100%
8 human 138046 RALYL RALY RNA binding protein like NM_001354325.1 100% 100%
9 human 138046 RALYL RALY RNA binding protein like NM_173848.7 100% 100%
10 human 138046 RALYL RALY RNA binding protein like NM_001354314.1 99.6% 99.6% 683_684insAGA
11 human 138046 RALYL RALY RNA binding protein like NM_001287243.2 96.2% 95.8% 331_332ins33
12 human 138046 RALYL RALY RNA binding protein like NM_001354307.1 96.2% 95.8% 331_332ins33
13 human 138046 RALYL RALY RNA binding protein like NM_001354309.1 96.2% 95.8% 331_332ins33
14 human 138046 RALYL RALY RNA binding protein like NM_001354312.1 96.2% 95.8% 331_332ins33
15 human 138046 RALYL RALY RNA binding protein like NM_001354315.1 96.2% 95.8% 331_332ins33
16 human 138046 RALYL RALY RNA binding protein like NM_001354317.1 96.2% 95.8% 331_332ins33
17 human 138046 RALYL RALY RNA binding protein like NM_001354318.1 96.2% 95.8% 331_332ins33
18 human 138046 RALYL RALY RNA binding protein like XM_017013068.1 96.2% 95.8% 331_332ins33
19 human 138046 RALYL RALY RNA binding protein like XM_017013071.1 96.2% 95.8% 331_332ins33
20 human 138046 RALYL RALY RNA binding protein like XM_024447065.1 96.2% 95.8% 331_332ins33
21 human 138046 RALYL RALY RNA binding protein like XM_024447066.1 96.2% 95.8% 331_332ins33
22 human 138046 RALYL RALY RNA binding protein like XM_024447067.1 96.2% 95.8% 331_332ins33
23 human 138046 RALYL RALY RNA binding protein like NM_001100391.2 95.7% 95.7% 1_39del
24 human 138046 RALYL RALY RNA binding protein like NM_001354321.1 92.1% 91.7% 1_39del;370_371ins33
25 human 138046 RALYL RALY RNA binding protein like NM_001354311.1 79.9% 78.6% (many diffs)
26 human 138046 RALYL RALY RNA binding protein like NM_001354313.1 79.9% 78.6% (many diffs)
27 human 138046 RALYL RALY RNA binding protein like NM_001354319.1 79.9% 78.6% (many diffs)
28 human 138046 RALYL RALY RNA binding protein like XM_011517462.3 77.4% 75.6% (many diffs)
29 human 138046 RALYL RALY RNA binding protein like XM_017013080.2 77.4% 75.6% (many diffs)
30 human 138046 RALYL RALY RNA binding protein like NM_001354323.1 76.5% 75.3% (many diffs)
31 human 138046 RALYL RALY RNA binding protein like XM_017013081.2 76.2% 74.5% (many diffs)
32 human 138046 RALYL RALY RNA binding protein like XM_017013082.1 76.2% 74.5% (many diffs)
33 human 138046 RALYL RALY RNA binding protein like XM_024447068.1 74.1% 72.3% (many diffs)
34 human 138046 RALYL RALY RNA binding protein like NM_001287244.1 73% 71.9% (many diffs)
35 human 138046 RALYL RALY RNA binding protein like NM_001354322.1 72.9% 71.3% (many diffs)
36 human 138046 RALYL RALY RNA binding protein like NM_001354310.1 69.7% 69.7% 0_1ins264
37 human 138046 RALYL RALY RNA binding protein like XM_017013084.2 69.3% 67.8% (many diffs)
38 human 138046 RALYL RALY RNA binding protein like XM_024447069.1 68.3% 67.3% (many diffs)
39 human 138046 RALYL RALY RNA binding protein like XM_024447070.1 65.9% 65.6% 0_1ins264;67_68ins33
40 mouse 76897 Ralyl RALY RNA binding protein-like NM_001163328.1 88% 94.8% (many diffs)
41 mouse 76897 Ralyl RALY RNA binding protein-like NM_178631.4 88% 94.8% (many diffs)
42 mouse 76897 Ralyl RALY RNA binding protein-like XM_011248150.2 88% 94.8% (many diffs)
43 mouse 76897 Ralyl RALY RNA binding protein-like XM_017319801.1 88% 94.8% (many diffs)
44 mouse 76897 Ralyl RALY RNA binding protein-like XM_006530100.1 84% 90.5% (many diffs)
45 mouse 76897 Ralyl RALY RNA binding protein-like XM_006530101.1 80.7% 86.6% (many diffs)
46 mouse 76897 Ralyl RALY RNA binding protein-like XM_017319802.1 70.9% 72.8% (many diffs)
47 mouse 76897 Ralyl RALY RNA binding protein-like XM_017319803.1 70.3% 76.4% (many diffs)
48 mouse 76897 Ralyl RALY RNA binding protein-like XM_006530102.1 67.8% 69.6% (many diffs)
49 mouse 76897 Ralyl RALY RNA binding protein-like XM_006530103.1 67.1% 72.9% (many diffs)
50 mouse 76897 Ralyl RALY RNA binding protein-like NM_001163329.1 66% 67.3% (many diffs)
51 mouse 76897 Ralyl RALY RNA binding protein-like NM_001163330.1 48.3% 48.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
939
ORF length:
873
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgac tggcaaaaca cagaccagca acgtcaccaa taagaatgac cccaagtcca
121tcaactcccg tgttttcatc ggcaatctaa atacggcaat tgtcaagaaa gttgacattg
181aagccatttt ttcaaagtat ggaaaaatag ttggatgttc cgttcacaaa ggttatgcat
241ttgtacagta catgagtgag cgacatgcaa gagctgcagt ggctggagaa aatgccagag
301tcatcgccgg ccaaccactt gatatcaaca tggcaggaga gcccaaacca tacagaccaa
361aacctggaaa caagaggccc ctttctgcac tttacagact tgaatcaaag gaacctttcc
421tgtctgttgg cggttatgtc tttgactatg attactacag agatgatttc tacaatcggt
481tatttgatta ccacgggcgt gtgcctccac cTCCCCGTGC AGTAATTCCG CTGAAGCGTC
541CCAGAGTGGC AGTCACAACG ACTCGCAGGG GGAAAGGAGT CTTTTCCATG AAAGGTGGAT
601CGAGATCTAC TGCCAGTGGG TCAACAGGTT CTAAATTGAA ATCAGATGAG TTACAGACCA
661TCAAGAAAGA ATTAACCCAG ATCAAAACTA AAATTGACTC CTTGCTAGGG CGCCTGGAGA
721AGATTGAGAA ACAGCAGAAG GCGGAGGCAG AAGCTCAGAA GAAGCAATTG GAAGAGAGTC
781TAGTGCTGAT CCAAGAGGAA TGTGTGTCAG AGATTGCAGA TCACTCTACA GAGGAGCCTG
841CTGAAGGAGG GCCAGATGCC GATGGAGAAG AGATGACAGA TGGGATAGAG GAGGACTTCG
901ATGAAGATGG GGGTCATGAG CTGTTTCTAC AGATAAAGTG CCCAACTTTC TTGTACAAAG
961TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
1021GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
1081ACGACGAAGT CCTTGCTTCC GCCAACTTAC GCGTTAAGTC gacaatcaac ctctggatta
1141caaaatttgt gaaagatt

Download FASTA (ORF) (Full)