Construct: ORF TRCN0000487765

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019255.1_s317c1
DNA Barcode:
TTCTTGTGTCTAGGATACTCTTTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HOMER2 (9455)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000487765
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9455 HOMER2 homer scaffold protein 2 NM_004839.4 100% 100%
2 human 9455 HOMER2 homer scaffold protein 2 XM_005272449.4 99.9% 99.7% 4A>G
3 human 9455 HOMER2 homer scaffold protein 2 XM_005272448.5 97.1% 96.6% 1_12del;17_34del
4 human 9455 HOMER2 homer scaffold protein 2 NM_199330.3 96.8% 96.8% 388_420del
5 human 9455 HOMER2 homer scaffold protein 2 XM_006720776.4 96.7% 96.6% 4A>G;388_420del
6 human 9455 HOMER2 homer scaffold protein 2 XM_011522233.3 94.6% 94.7% 1_23delinsA;27_28delAA;412_444del
7 human 9455 HOMER2 homer scaffold protein 2 XM_006720775.3 94.2% 93.6% 1_12del;17_34del;418_450del
8 human 9455 HOMER2 homer scaffold protein 2 XM_011522231.3 94.2% 93.6% 1_12del;17_34del;418_450del
9 human 9455 HOMER2 homer scaffold protein 2 XM_011522232.2 94.2% 93.6% 1_12del;17_34del;418_450del
10 human 9455 HOMER2 homer scaffold protein 2 XM_011522234.3 90.1% 90.1% 0_1ins72;316_348del
11 mouse 26557 Homer2 homer scaffolding protein 2 NM_001164086.1 89.8% 94.4% (many diffs)
12 mouse 26557 Homer2 homer scaffolding protein 2 NM_011983.2 87% 91.5% (many diffs)
13 mouse 26557 Homer2 homer scaffolding protein 2 NM_001164087.1 70.2% 74% (many diffs)
14 mouse 26557 Homer2 homer scaffolding protein 2 XM_006540909.1 70.2% 74% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
75
ORF end:
1104
ORF length:
1029
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcgc caccatggga gaacagccca tcttcaccac ccgagcgcat gtcttccaga
121ttgaccccaa caccaagaag aactggatgc ctgcgagcaa gcaggcggtc accgtttcct
181acttctatga tgtcacaagg aacagctatc ggatcatcag tgtggacgga gccaaggtga
241tcataaacag cacaatcaca ccgaatatga ccttcaccaa aacgtcacag aagtttgggc
301agtgggccga cagcagagcc aacacagtgt ttggtttggg gttttcctct gagcagcagc
361tgacaaagtt tgcagagaaa ttccaggagg tgaaagaagc tgccaagata gccaaagaca
421agacgcagga gaaaatcgag acctcaagta atcattccca agcatccagt gtcaacggga
481cggacgatga aaaggcctct cacgccggtc cagccaacac acacctgaag tctgagaatg
541acaagctgaa gattgccttg acgcagagcg cagccaacgt gaagaagtgg gagatcgagc
601tgcagaccct tcgggagagc aatgcacggc tgaccacagc actgcaggag tcggcagcca
661gtgtggagca gtggaagagg cagttctcca tctgccgtga tgagaatgac cggctccgca
721acaagattga tgagctggaa gaacaatgca gtgagatcaa cagagagaag gagaagaaca
781cgcagctgaa gaggaggatc gaggagctgg aggcagagct ccgagaaaag gagacagagc
841tgaaagatct ccgaaaacaa agtgaaatca taccTCAGCT CATGTCAGAG TGCGAATATG
901TCTCTGAGAA GCTAGAGGCG GCAGAGAGAG ACAATCAAAA CCTGGAAGAC AAAGTGCGTT
961CCTTAAAGAC AGACATTGAG GAGAGCAAAT ACCGACAGCG CCACCTGAAG GTGGAGTTGA
1021AGAGCTTCCT GGAGGTGCTG GACGGGAAGA TTGACGACCT GCATGACTTC CGCCGAGGGC
1081TCTCCAAGCT GGGCACCGAT AACGACCCAG CTTTCTTGTA CAAAGTGGTT GATATCGGTA
1141AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC
1201TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAT TCTTGTGTCT
1261AGGATACTCT TTCACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag
1321att

Download FASTA (ORF) (Full)