Transcript: Human XM_011522233.3

PREDICTED: Homo sapiens homer scaffold protein 2 (HOMER2), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
HOMER2 (9455)
Length:
5588
CDS:
16..1104

Additional Resources:

NCBI RefSeq record:
XM_011522233.3
NBCI Gene record:
HOMER2 (9455)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011522233.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000116136 CAGCACAATCACACCGAATAT pLKO.1 213 CDS 100% 13.200 18.480 N HOMER2 n/a
2 TRCN0000424616 TAAGGGCTGTTGCAACCATAT pLKO_005 1390 3UTR 100% 10.800 15.120 N HOMER2 n/a
3 TRCN0000418116 TGTAAATGCAGGCGCAGTTTG pLKO_005 1195 3UTR 100% 10.800 15.120 N HOMER2 n/a
4 TRCN0000116133 CAAGTAATCATTCCCAAGAAT pLKO.1 410 CDS 100% 5.625 7.875 N HOMER2 n/a
5 TRCN0000116132 CGGTTGCAACAGTGTTCCTTT pLKO.1 1702 3UTR 100% 4.950 6.930 N HOMER2 n/a
6 TRCN0000116135 GTCACCGTTTCCTACTTCTAT pLKO.1 133 CDS 100% 5.625 3.938 N HOMER2 n/a
7 TRCN0000116134 GAAGACAAAGTGCGTTCCTTA pLKO.1 943 CDS 100% 4.950 3.465 N HOMER2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011522233.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000487765 TTCTTGTGTCTAGGATACTCTTTC pLX_317 22.6% 94.6% 94.7% V5 1_23delinsA;27_28delAA;412_444del n/a
2 TRCN0000488563 ACTTACCTTGTCAGGAAGGGAAGC pLX_317 35.3% 94.6% 94.7% V5 (not translated due to prior stop codon) 1_23delinsA;27_28delAA;412_444del n/a
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