Construct: ORF TRCN0000487932

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021511.1_s317c1
DNA Barcode:
TGGAGCCCGATACTTACTTGACAC
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
USP30 (84749)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000487932
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84749 USP30 ubiquitin specific peptidas... NM_032663.5 98.1% 98.2% 1_27del;639T>C
2 human 84749 USP30 ubiquitin specific peptidas... XM_005253962.3 98% 98% 1_27del;577_578insAGC;636T>C
3 human 84749 USP30 ubiquitin specific peptidas... NM_001301175.1 95.6% 95.6% 0_1ins66;546T>C
4 human 84749 USP30 ubiquitin specific peptidas... XM_006719653.3 95.6% 95.6% 0_1ins66;546T>C
5 human 84749 USP30 ubiquitin specific peptidas... XM_024449227.1 92.3% 92.3% 1_27del;639T>C;947_1045del
6 human 84749 USP30 ubiquitin specific peptidas... XM_017020048.1 91.6% 91.6% 1_27del;639T>C;1168_1278del
7 human 84749 USP30 ubiquitin specific peptidas... XM_017020049.1 91.4% 91.5% (many diffs)
8 human 84749 USP30 ubiquitin specific peptidas... XM_017020050.1 89.1% 89.1% 0_1ins66;546T>C;1075_1185del
9 human 84749 USP30 ubiquitin specific peptidas... XM_017020051.2 89.1% 89.1% 0_1ins66;546T>C;1075_1185del
10 human 84749 USP30 ubiquitin specific peptidas... XM_017020052.2 89.1% 89.1% 0_1ins66;546T>C;1075_1185del
11 human 84749 USP30 ubiquitin specific peptidas... XM_005253965.4 86.3% 86.4% 1_27del;189_190ins183;456T>C
12 human 84749 USP30 ubiquitin specific peptidas... XM_024449228.1 83.5% 83.6% 0_1ins66;96_97ins183;363T>C
13 human 84749 USP30 ubiquitin specific peptidas... XM_017020053.1 80.6% 80.6% (many diffs)
14 human 84749 USP30 ubiquitin specific peptidas... XM_011538894.2 72.3% 72.4% 0_1ins417;133_134insAGC;192T>C
15 human 84749 USP30 ubiquitin specific peptidas... XM_017020054.1 67.4% 67.5% (many diffs)
16 mouse 100756 Usp30 ubiquitin specific peptidas... NM_001033202.3 84.2% 88.2% (many diffs)
17 mouse 100756 Usp30 ubiquitin specific peptidas... XM_017320581.1 84% 88% (many diffs)
18 mouse 100756 Usp30 ubiquitin specific peptidas... XM_011248156.2 62.4% 64.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1593
ORF length:
1524
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcaccat gaccgcggcc gacagggcca tccagcgctt cctgcggacc ggggcggccg
121tcagatataa agtcatgaag aactggggag ttataggtgg aattgctgct gctcttgcag
181caggaatata tgttatttgg ggtcccatta cagaaagaaa gaagcgtaga aaagggcttg
241tgcctggcct tgttaattta gggaacacct gcttcatgaa ctccctgcta caaggcctgt
301ctgcctgtcc tgctttcatc aggtggctgg aagagttcac ctcccagtac tccagggatc
361agaaggagcc cccctcacac cagtatttat ccttaacact cttgcacctt ctgaaagcct
421tgtcctgcca agaagttact gatgatgagg tcttagatgc aagctgcttg ttggatgtct
481taagaatgta cagatggcag atctcatcat ttgaagaaca ggatgctcac gaattattcc
541atgtcattac ctcgtcattg gaagatgagc gagaccgcca gcctcgggtc acacatttgt
601ttgatgtgca ttccctggag cagcagtcag aaataactcc caaacaaatt acctgccgca
661caagagggtc acctcacccc acatccaatc actggaagtc tcaacatcct tttcatggaa
721gactcactag taatatggtc tgcaaacact gtgaacacca gagtcctgtt cgatttgata
781cctttgatag cctttcacta agtattccag ccgccacatg gggtcaccca ttgaccctgg
841accactgcct tcaccacttc atctcatcag aatcagtgcg ggatgttgtg tgtgacaact
901gtacaaagat tgaagccaag ggaacgttga acggggaaaa ggtggaacac cagaggacca
961cttttgttaa acagttaaaa ctagggaagc tccctcagtg tctctgcatc cacctacagc
1021ggctgagctg gtccagccac ggcacgcctc tgaagcggca tgagcacgtg cagttcaatg
1081agttcctgat gatggacatt tacaagtacc acctccttgg acataaacct agtcaacaca
1141accctaaact gaacaagaac ccagggccta cactggagct gcaggatggg ccgggagccc
1201ccacaccagt tctgaatcag ccaggggccc ccaaaacaca gatttttatg aatggcgcct
1261gctccccatc tttattgcca acgctgtcag cgccgatgcc cttccctctc ccagttgttc
1321ccgactacag ctcctccaca taccTCTTCC GGCTGATGGC AGTTGTCGTC CACCATGGAG
1381ACATGCACTC TGGACACTTT GTCACTTACC GACGGTCCCC ACCTTCTGCC AGGAACCCTC
1441TCTCAACTAG CAATCAGTGG CTGTGGGTCT CCGATGACAC TGTCCGCAAG GCCAGCCTGC
1501AGGAGGTCCT GTCCTCCAGC GCCTACCTGC TGTTCTACGA GCGCGTCCTT TCCAGGATGC
1561AGCACCAGAG CCAGGAGTGC AAGTCTGAAG AATAGAACCC AGCTTTCTTG TACAAAGTGG
1621TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
1681CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
1741ATGGAGCCCG ATACTTACTT GACACACGCG TTAAGTCgac aatcaacctc tggattacaa
1801aatttgtgaa agatt

Download FASTA (ORF) (Full)

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