Construct: ORF TRCN0000488011
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF020325.1_s317c1
- DNA Barcode:
- TCACCTCCAGCAGAACGCTGCTGA
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- CDK17 (5128)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000488011
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5128 | CDK17 | cyclin dependent kinase 17 | NM_002595.5 | 100% | 100% | |
| 2 | human | 5128 | CDK17 | cyclin dependent kinase 17 | XM_017019405.1 | 100% | 100% | |
| 3 | human | 5128 | CDK17 | cyclin dependent kinase 17 | XM_017019406.1 | 100% | 100% | |
| 4 | human | 5128 | CDK17 | cyclin dependent kinase 17 | NM_001170464.3 | 97.9% | 96.4% | (many diffs) |
| 5 | human | 5128 | CDK17 | cyclin dependent kinase 17 | XM_017019407.2 | 95.9% | 95.9% | 809_810ins63 |
| 6 | mouse | 237459 | Cdk17 | cyclin-dependent kinase 17 | NM_146239.2 | 90.5% | 98.6% | (many diffs) |
| 7 | mouse | 237459 | Cdk17 | cyclin-dependent kinase 17 | XM_006513627.2 | 90.5% | 98.6% | (many diffs) |
| 8 | mouse | 237459 | Cdk17 | cyclin-dependent kinase 17 | XM_011243447.2 | 90.5% | 98.6% | (many diffs) |
| 9 | mouse | 237459 | Cdk17 | cyclin-dependent kinase 17 | XM_011243446.2 | 88.3% | 96.3% | (many diffs) |
| 10 | mouse | 237459 | Cdk17 | cyclin-dependent kinase 17 | XM_006513626.2 | 87.8% | 95.7% | (many diffs) |
| 11 | mouse | 237459 | Cdk17 | cyclin-dependent kinase 17 | XR_380395.3 | 64.7% | (many diffs) | |
| 12 | mouse | 237459 | Cdk17 | cyclin-dependent kinase 17 | XR_380396.3 | 28.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 1641
- ORF length:
- 1569
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catgaaaaaa tttaagagaa ggctatccct cacactccga ggaagtcaga 121 ctattgatga atcattgtct gaattggctg aacaaatgac tattgaagaa aacagcagca 181 aggataatga gcctattgtg aagaatggca ggcctccaac gtctcacagt atgcattcct 241 tcctccacca gtacacagga tctttcaaga agcccccatt gcggagacca cacagtgtta 301 ttggagggag ccttggctcc ttcatggcaa tgcccagaaa tggaagcaga ttagatattg 361 ttcatgaaaa tctaaaaatg ggatcagatg gtgagagtga ccaagcttct gggacatcat 421 ctgatgaagt ccagtcacct acaggtgttt gtctcagaaa tcgtatacat agacggatct 481 caatggagga tttaaataag cggttatcac tgcctgcaga catcagaata cctgatggat 541 atcttgaaaa gttgcagata aacagtccac catttgacca accaatgagt cgaaggtctc 601 gtagagcttc cttatcagaa attggctttg gaaaaatgga aacctacatc aaattggaaa 661 agcttggaga gggtacatat gcaacagtat ataaaggaag aagtaaattg acagagaatt 721 tggtggcatt aaaagagatc cgattggaac atgaagaagg tgcaccctgc acagctataa 781 gagaagtttc actattaaag gatttaaaac atgcaaatat agtaacctta catgacattg 841 ttcacacaga taaatccttg actttggtgt ttgagtatct ggataaagac ctgaaacagt 901 acatggatga ctgtggaaac atcatgagta tgcacaacgt aaagctgttt ctgtaccaaa 961 ttctacgtgg tttggcatat tgccatagaa gaaaggtatt gcatcgagac ttgaaaccac 1021 agaacctcct cattaatgag aaaggagaat taaagctagc agattttgga ctagcccgag 1081 ccaagtcagt tcccacaaag acctactcaa atgaagttgt cacactatgg taccggccac 1141 ctgatgtgct tcttggttcc tcggagtact caacacagat tgacatgtgg ggtgttggtt 1201 gcattttctt tgaaatggct tctggaagac ctttatttcc aggatcaacc gtggaagatg 1261 aactgcactt aattttccga ctgctaggaa ctccatctca ggaaacttgg CCAGGTATTT 1321 CTTCAAATGA GGAGTTCAAG AACTACAACT TTCCAAAATA TAAACCACAG CCTCTAATTA 1381 ACCACGCACC CAGGTTAGAC TCTGAAGGAA TTGAGTTGAT AACAAAATTT CTTCAGTATG 1441 AATCTAAGAA AAGGGTTTCA GCTGAAGAGG CCATGAAACA TGTGTACTTT CGAAGTCTGG 1501 GACCAAGAAT ACATGCTTTA CCAGAAAGTG TATCAATATT CAGTTTGAAA GAGATTCAGT 1561 TGCAAAAGGA CCCGGGTTTT CGAAATTCTT CTTATCCAGA GACAGGACAT GGGAAGAACA 1621 GAAGACAGAG CATGCTCTTT TGAGACCCAG CTTTCTTGTA CAAAGTGGTT GATATCGGTA 1681 AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC 1741 TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAT CACCTCCAGC 1801 AGAACGCTGC TGAACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag 1861 att