Construct: ORF TRCN0000488255

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021981.1_s317c1
DNA Barcode:
ACGTTGGAAAGGGAAAGCTGGCTT
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
SMG1 (23049)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488255
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23049 SMG1 SMG1 nonsense mediated mRNA... NM_015092.4 99.9% 99.9% (many diffs)
2 human 23049 SMG1 SMG1 nonsense mediated mRNA... XM_005255182.3 99.1% 99.2% (many diffs)
3 human 23049 SMG1 SMG1 nonsense mediated mRNA... XM_011545769.3 99.1% 99.1% (many diffs)
4 human 23049 SMG1 SMG1 nonsense mediated mRNA... XM_005255183.4 98.4% 98.2% (many diffs)
5 human 23049 SMG1 SMG1 nonsense mediated mRNA... XM_017023066.2 98.4% 98.2% (many diffs)
6 human 23049 SMG1 SMG1 nonsense mediated mRNA... XM_005255184.4 97.7% 97.8% (many diffs)
7 human 23049 SMG1 SMG1 nonsense mediated mRNA... XM_024450198.1 97% 96.8% (many diffs)
8 human 23049 SMG1 SMG1 nonsense mediated mRNA... XM_024450199.1 97% 96.8% (many diffs)
9 human 23049 SMG1 SMG1 nonsense mediated mRNA... XM_011545770.1 82.1% 82.1% (many diffs)
10 human 23049 SMG1 SMG1 nonsense mediated mRNA... XM_017023067.1 82.1% 82.1% (many diffs)
11 human 641298 SMG1P1 SMG1 pseudogene 1 NR_027154.1 38.6% (many diffs)
12 human 100271836 SMG1P3 SMG1 pseudogene 3 NR_027155.2 38.5% (many diffs)
13 human 100422558 SMG1P6 SMG1 pseudogene 6 NR_135312.1 26.9% (many diffs)
14 human 440354 SMG1P2 SMG1 pseudogene 2 NR_135305.1 17.7% (many diffs)
15 human 107984138 LOC107984138 serine/threonine-protein ki... XM_017023965.2 17.5% 16.8% (many diffs)
16 human 595101 SMG1P5 SMG1 pseudogene 5 NR_002453.5 17.3% (many diffs)
17 human 440354 SMG1P2 SMG1 pseudogene 2 NR_135317.1 15.6% (many diffs)
18 human 107984138 LOC107984138 serine/threonine-protein ki... XM_017023966.2 11.3% 11% (many diffs)
19 human 107282092 BOLA2-SMG1P6 BOLA2-SMG1P6 readthrough NM_001320622.1 7.2% 5.7% (many diffs)
20 human 107282092 BOLA2-SMG1P6 BOLA2-SMG1P6 readthrough NM_001320624.1 7% 5.6% (many diffs)
21 human 107282092 BOLA2-SMG1P6 BOLA2-SMG1P6 readthrough NM_001320623.1 6.6% 4.9% (many diffs)
22 human 107282092 BOLA2-SMG1P6 BOLA2-SMG1P6 readthrough NM_001320627.1 5.2% 5.1% (many diffs)
23 human 107282092 BOLA2-SMG1P6 BOLA2-SMG1P6 readthrough NM_001320628.1 5.2% 5.1% (many diffs)
24 human 107282092 BOLA2-SMG1P6 BOLA2-SMG1P6 readthrough NM_001320625.1 4.4% 4.3% (many diffs)
25 mouse 233789 Smg1 SMG1 homolog, phosphatidyli... NM_001031814.1 90.4% 97.6% (many diffs)
26 mouse 233789 Smg1 SMG1 homolog, phosphatidyli... XM_006507677.2 90.4% 97.6% (many diffs)
27 mouse 233789 Smg1 SMG1 homolog, phosphatidyli... XM_006507678.2 89.7% 96.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
108
ORF end:
11091
ORF length:
10983
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggctccgc ggccgccccc ttcaccgtcg acgtgtcggg gaaggtaatg agccgcagag
121ccccggggtc tcggctgagc agcggaggcg gcggcggggg caccaagtat ccgcggagct
181ggaatgactg gcaacccaga actgatagtg catcagccga cccagataat ttaaaatatt
241cttcatccag agatagaggt ggttcttcct cttatggact gcaaccttca aattcagctg
301tggtgtctcg gcaaaggcac gatgatacca gagtccacgc tgacatacag aatgacgaaa
361agggtggcta cagtgtcaat ggaggatctg gggaaaatac ttatggtcgg aagtcgttgg
421ggcaagagct gagggttaac aatgtgacca gccctgagtt caccagtgtt cagcatggca
481gtcgtgcttt agccaccaaa gacatgagga aatcacagga gagatcgatg tcttattctg
541atgagtctcg actgtcgaat cttcttcgga ggatcacccg ggaagacgac agagaccgaa
601gattggctac tgtaaagcag ttgaaagaat ttattcagca accagaaaat aagctggtac
661tagttaaaca attggataat atcttggctg ctgtacatga cgtgcttaat gaaagtagca
721aattgcttca ggagttgaga caggagggag cttgctgtct tggccttctt tgtgcttctc
781tgagctatga ggctgagaag atcttcaagt ggatttttag caaatttagc tcatctgcaa
841aagatgaagt taaactcctc tacttatgtg ccacctacaa agcactagag actgtaggag
901aaaagaaagc cttttcatct gtaatgcagc ttgtaatgac cagcctgcag tctattcttg
961aaaatgtgga tacaccagaa ttgctttgta aatgtgttaa gtgcattctt ttggtggctc
1021gatgttaccc tcatattttc agcactaatt ttagggatac agttgatata ttagttggat
1081ggcatataga tcatactcag aaaccttcgc tcacgcagca ggtatctggg tggttgcaga
1141gtttggagcc attttgggta gctgatcttg cattttctac tactcttctt ggtcagtttc
1201tggaagacat ggaagcatat gctgaggacc tcagccatgt ggcctctggg gaatcagtgg
1261atgaagatgt ccctcctcca tcagtgtcat taccaaagct ggctgcactt ctccgggtat
1321ttagtactgt ggtgaggagc attggggaac gcttcagccc aattcggggt cctccaatta
1381ctgaggcata tgtaacagat gttctgtaca gagtaatgag atgtgtgacg gctgcaaacc
1441aggtgttttt ttctgaggct gtgttgacag ctgctaatga gtgtgttggt gttttgctcg
1501gcagcttgga tcctagcatg actatacatt gtgacatggt cattacatat ggattagacc
1561aactggagaa ttgccagact tgtggtaccg attatatcat ctcagtcttg aatttactca
1621cgctgattgt tgaacagata aatacgaaac tgccatcatc atttgtagaa aaactgttta
1681taccatcatc taaactacta ttcttgcgtt atcataaaga aaaagaggtt gttgctgtag
1741cccatgctgt ttatcaagca gtgctcagct tgaagaatat tcctgttttg gagactgcct
1801ataagttaat attgggagaa atgacttgtg ccctaaacaa cctcctacac agtctacaac
1861ttcctgaggc ctgttctgaa ataaaacatg aggcttttaa gaatcatgtg ttcaatgtag
1921acaatgcaaa atttgtagtt atatttgacc tcagtgccct gactacaatt ggaaatgcca
1981aaaactcact aatagggatg tgggcgctat ctccaactgt ctttgcactt ctgagtaaga
2041atctgatgat tgtgcacagt gacctggctg ttcacttccc tgccattcag tatgctgtgc
2101tctacacatt gtattctcat tgtaccaggc atgatcactt tatctctagt agcctcagtt
2161cttcctctcc ttctttgttt gatggagctg tgattagcac tgtaactacg gctacaaaga
2221aacatttctc aattatatta aatcttctgg gaatattact taagaaagat aaccttaacc
2281aggacacgag gaaactgtta atgacttggg ctttggaagc agctgtttta atgaagaagt
2341ctgaaacata cgcaccttta ttctctcttc cgtctttcca taaattttgc aaaggccttt
2401tagccaacac tctcgttgaa gatgtgaata tctgtctgca ggcatgcagc agtctacatg
2461ctctgtcctc ttccttgcca gatgatcttt tacagagatg tgtcgatgtt tgccgtgttc
2521aactagtgca cagtggaact cgtattcgac aagcatttgg aaaactgttg aaatcaattc
2581ctttagatgt tgtcctaagc aataacaatc acacagaaat tcaagaaatt tctttagcat
2641taagaagtca catgagtaaa gcaccaagta atacattcca cccccaagat ttctctgatg
2701ttattagttt tattttgtat gggaactctc atagaacagg gaaggacaat tggttggaaa
2761gactgttcta tagctgccag agactggata agcgtgacca gtcaacaatt ccacgcaatc
2821tcctgaagac agatgctgtc ctttggcagt gggccatatg ggaagctgca caattcactg
2881ttctttctaa gctgagaacc ccactgggca gagctcaaga caccttccag acaattgaag
2941gtatcattcg aagtctcgca gctcacacat taaaccctga tcaggatgtt agtcagtgga
3001caactgcaga caatgatgaa ggccatggta acaaccaact tagacttgtt cttcttctgc
3061agtatctgga aaatctggag aaattaatgt ataatgcata cgagggatgt gctaatgcat
3121taacttcacc tcccaaggtc attagaactt ttttctatac caatcgccaa acttgtcagg
3181actggctaac gcggattcga ctctccatca tgagggtagg attgttggca ggccagcctg
3241cagtgacagt gagacatggc tttgacttgc ttacagagat gaaaacaacc agcctatctc
3301aggggaatga attggaagta accattatga tggtggtaga agcattatgt gaacttcatt
3361gtcctgaagc tatacaggga attgctgtct ggtcatcatc tattgttgga aaaaatcttc
3421tgtggattaa ctcagtggct caacaggctg aagggaggtt tgaaaaggcc tctgtggagt
3481accaggaaca cctgtgtgcc atgacaggtg ttgattgctg catctccagc tttgacaaat
3541cggtgctcac cttagccaat gctgggcgta acagtgccag cccgaaacat tctctgaatg
3601gtgaatccag aaaaactgtg ctgtccaaac cgactgactc ttcccctgag gttataaatt
3661atttaggaaa taaagcatgt gagtgctaca tctcaattgc cgattgggct gctgtgcagg
3721aatggcagaa cgctatccat gacttgaaaa agagtaccag tagcacttcc ctcaacctga
3781aagctgactt caactatata aaatcattaa gcagctttga gtctggaaaa tttgttgaat
3841gtaccgagca gttagaattg ttaccaggag aaaatatcaa tctacttgct ggaggatcaa
3901aagaaaaaat agacatgaaa aaactgcttc ctaacatgtt aagtccggat ccgagggaac
3961ttcagaaatc cattgaagtt caattgttaa gaagttctgt ttgtttggca actgctttaa
4021acccgataga acaagatcag aagtggcagt ctataactga aaatgtggta aagtacttga
4081agcaaacatc ccgcatcgct attggacctc tgagactttc tactttaaca gtttcacagt
4141ctttgccagt tctaagtacc ttgcagctgt attgctcatc tgctttggag aacacagttt
4201ctaacagact ttcaacagag gactgtctta ttccactctt cagtgaagct ttacgttcat
4261gtaaacagca tgacgtgagg ccatggatgc aggcattaag gtatactatg taccagaatc
4321agttgttgga gaaaattaaa gaacaaacag tcccaattag aagccatctc atggaattag
4381gtctaacagc agcaaaattt gctagaaaac gagggaatgt gtcccttgca acaagactgc
4441tggcacagtg cagtgaagtt cagctgggaa agaccaccac tgcacaggat ttagtccaac
4501attttaaaaa actatcaacc caaggtcaag tggatgaaaa atgggggccc gaacttgata
4561ttgaaaaaac caaattgctt tatacagcag gccagtcaac acatgcaatg gaaatgttga
4621gttcttgtgc catatctttc tgcaagtctg tgaaagctga atatgcagtt gctaaatcaa
4681ttctgacact ggctaaatgg atccaggcag aatggaaaga gatttcagga cagctgaaac
4741aggtttacag agctcagcac caacagaact tcacaggtct ttctactttg tctaaaaaca
4801tactcactct aatagaactg ccatctgtta atacgatgga agaagagtat cctcggatcg
4861agagtgaatc tacagtgcat attggagttg gagaacctga cttcattttg ggacagttgt
4921atcacctgtc ttcagtacag gcacctgaag tagccaaatc ttgggcagcg ttggccagct
4981gggcttatag gtggggcaga aaggtggttg acaatgccag tcagggagaa ggtgttcgtc
5041tgctgcctag agaaaaatct gaagttcaga atctacttcc agacactata actgaggaag
5101agaaagagag aatatatggt attcttggac aggctgtgtg tcggccggcg gggattcagg
5161atgaagatat aacacttcag ataactgaga gtgaagacaa cgaagaagat gacatggttg
5221atgttatctg gcgtcagttg atatcaagct gcccatggct ttcagaactt gatgaaagtg
5281caactgaagg agttattaaa gtgtggagga aagttgtaga tagaatattc agcctgtaca
5341aactctcttg cagtgcatac tttactttcc ttaaactcaa cgctggtcaa attcctttag
5401atgaggatga ccctaggctg catttaagtc acagagtgga acagagcact gatgacatga
5461ttgtgatggc cacattgcgc ctgctgcggt tgctcgtgaa gcatgctggt gagcttcggc
5521agtatctgga gcacggcttg gagacaacac ccactgcacc atggagagga attattccgc
5581aacttttctc acgcttaaac caccctgaag tgtatgtgcg ccaaagtatt tgtaaccttc
5641tctgccgtgt ggctcaagat tccccacatc tcatattgta tcctgcaata gtgggtacca
5701tatcgcttag tagtgaatcc caggcttcag gaaataaatt ttccactgca attccaactt
5761tacttggcaa tattcaagga gaagaattgc tggtttctga atgtgaggga ggaagtcctc
5821ctgcatctca ggatagcaat aaggatgaac ctaaaagtgg attaaatgaa gaccaagcca
5881tgatgcagga ttgttacagc aaaattgtag ataagctgtc ctctgcaaac cccaccatgg
5941tattacaggt tcagatgctc gtggctgaac tgcgcagggt cactgtgctc tgggatgagc
6001tctggctggg agttttgctg caacaacaca tgtatgtcct gagacgaatt cagcagcttg
6061aagatgaggt gaagagagtc cagaacaaca acaccttacg caaagaagag aaaattgcaa
6121tcatgaggga gaagcacaca gctttgatga agcccatcgt atttgctttg gagcatgtga
6181ggagtatcac agcggctcct gcagaaacac ctcatgaaaa atggtttcag gataactatg
6241gtgatgccat tgaaaatgcc ctagaaaaac tgaagactcc attgaaccct gcaaagcctg
6301ggagcagctg gattccattt aaagagataa tgctaagttt gcaacagaga gcacagaagc
6361gtgcaagtta catcttgcgt cttgaagaaa tcagtccatg gttggctgcc atgactaaca
6421ctgaaattgc tcttcctggg gaagtctcag ccagagacac tgtcacaatc catagtgtgg
6481gcggaaccat cacaatctta ccgactaaaa ccaagccaaa gaaacttctc tttcttggat
6541cagatgggaa gagctatcct tatcttttca aaggactgga ggatttacat ctggatgaga
6601gaataatgca gttcctatct attgtgaata ccatgtttgc tacaattaat cgccaagaaa
6661caccccggtt ccatgctcga cactattctg taacaccact aggaacaaga tcaggactaa
6721tccagtgggt agatggagcc acacccttat ttggtcttta caaacgatgg caacaacggg
6781aagctgcctt acaagcacaa aaggcccaag attcctacca aactcctcag aatcctggaa
6841ttgtaccccg tcctagtgaa ctttattaca gtaaaattgg ccctgctttg aaaacagttg
6901ggcttagcct ggatgtgtcc cgtcgggatt ggcctcttca tgtaatgaag gcagtattgg
6961aagagttaat ggaggccaca cccccgaatc tccttgccaa agagctctgg tcatcttgca
7021caacacctga tgaatggtgg agagttacgc agtcttatgc aagatctact gcagtcatgt
7081ctatggttgg atacataatt ggccttggag ccagacatct ggataatgtt cttatagata
7141tgacgactgg agaagttgtt cacatagatt acaatgtttg ctttgaaaaa ggtaaaagcc
7201ttagagttcc tgagaaagta ccttttcgaa tgacacaaaa cattgaaaca gcactgggtg
7261taactggagt agaaggtgta tttaggcttt catgtgagca ggttttacac attatgcggc
7321gtggcagaga gaccctgctg acgctgctgg aggcctttgt gtacgaccct ctggtggact
7381ggacagcagg aggcgaggct gggtttgctg gtgctgtcta tggtggaggt ggccagcagg
7441ccgagagcaa gcagagcaag agagagatgg agcgagagat cacccgcagc ctgttttctt
7501ctagagtagc tgagattaag gtgaactggt ttaagaatag agatgagatg ctggttgtgc
7561ttcccaagtt ggacggtagc ttagatgaat acctaagctt gcaagagcaa ctgacagatg
7621tggaaaaact gcagggcaaa ctactggagg aaatagagtt tctagaagga gctgaagggg
7681tggatcatcc ttctcatact ctgcaacaca ggtattctga gcacacccaa ctacagactc
7741agcaaagagc tgttcaggaa gcaatccagg tgaagctgaa tgaatttgaa caatggataa
7801cacattatca ggctgcattc aataatttag aagcaacaca gcttgcaagc ttgcttcaag
7861agataagcac acaaatggac cttggtcctc caagttacgt gccagcaaca gcctttctgc
7921agaatgctgg tcaggcccac ttgattagcc agtgcgagca gctggagggg gaggttggtg
7981ctctcctgca gcagaggcgc tccgtgctcc gtggctgtct ggagcaactg catcactatg
8041caaccgtggc cctgcagtat ccgaaggcca tatttcagaa acatcgaatt gaacagtgga
8101agacctggat ggaagagctc atctgtaaca ccacagtaga gcgttgtcaa gagctctata
8161ggaaatatga aatgcaatat gctccccagc cacccccaac agtgtgtcag ttcatcactg
8221ccactgaaat gaccctgcag cgatacgcag cagacatcaa cagcagactt attagacaag
8281tggaacgctt gaaacaggaa gctgtcactg tgccagtttg tgaagatcag ttgaaagaaa
8341ttgaacgttg cattaaagtt ttccttcatg agaatggaga agaaggatct ttgagtctag
8401caagtgttat tatttctgcc ctttgtaccc ttacaaggcg taacctgatg atggaaggtg
8461cagcgtcaag tgctggagaa cagctggttg atctgacttc tcgggatgga gcctggttct
8521tggaggaact ctgcagtatg agcggaaacg tcacctgctt ggttcagtta ctgaagcagt
8581gccacctggt gccacaggac ttagatatcc cgaaccccat ggaagcgtct gagacagttc
8641acttagccaa tggagtgtat acctcacttc aggaattgaa ttcgaatttc cggcaaatca
8701tatttccaga agcacttcga tgtttaatga aaggggaata cacgttagaa agtatgctgc
8761atgaactgga cggtcttatt gagcagacca ccgatggcgt tcccctgcag actctagtgg
8821aatctcttca ggcctactta agaaacgcag ctatgggact ggaagaagaa acacatgctc
8881attacatcga tgttgccaga ctactacatg ctcagtacgg tgaattaatc caaccgagaa
8941atggttcagt tgatgaaaca cccaaaatgt cagctggcca gatgcttttg gtagcattcg
9001atggcatgtt tgctcaagtt gaaactgctt tcagcttatt agttgaaaag ttgaacaaga
9061tggaaattcc catagcttgg cgaaagattg acatcataag ggaagccagg agtactcaag
9121ttaatttttt tgatgatgat aatcaccggc aggtgctaga agagattttc tttctaaaaa
9181gactacagac tattaaggag ttcttcaggc tctgtggtac cttttctaaa acattgtcag
9241gatcaagttc acttgaagat cagaatactg tgaatgggcc tgtacagatt gtcaatgtga
9301aaaccctttt tagaaactct tgtttcagtg aagaccaaat ggccaaacct atcaaggcat
9361tcacagctga ctttgtgagg cagctcttga tagggctacc caaccaagcc ctcggactca
9421cactgtgcag ttttatcagt gctctgggtg tagacatcat tgctcaagta gaggcaaagg
9481actttggtgc cgaaagcaaa gtttctgttg atgatctctg taagaaagcg gtggaacata
9541acatccagat agggaagttc tctcagctgg ttatgaacag ggcaactgtg ttagcaagtt
9601cttacgacac tgcctggaag aagcatgact tggtgcgaag gctagaaacc agtatttctt
9661cttgtaagac aagcctgcag cgggttcagc tgcatattgc catgtttcag tggcaacatg
9721aagatctact tatcaataga ccacaagcca tgtcagtcac acctccccca cggtctgcta
9781tcctaaccag catgaaaaag aagctgcata ccctgagcca gattgaaact tctattgcaa
9841cagttcagga gaagctagct gcacttgaat caagtattga acagcgactc aagtgggcag
9901gtggtgccaa ccctgcattg gcccctgtac tacaagattt tgaagcaacg atagctgaaa
9961gaagaaatct tgtccttaaa gagagccaaa gagcaagtca ggtcacattt ctctgcagca
10021atatcattca ttttgaaagt ttacgaacaa gaactgcaga agccttaaac ctggatgcgg
10081cgttatttga actaatcaag cgatgtcagc agatgtgttc gtttgcatca cagtttaaca
10141gttcagtgtc tgagttagag cttcgtttat tacagagagt ggacactggt cttgaacatc
10201ctattggcag ctctgaatgg cttttgtcag cacacaaaca gttgacccag gatatgtcta
10261ctcagagggc aattcagaca gagaaagagc agcagataga aacggtctgt gaaacaattc
10321agaatctggt tgataatata aagactgtgc tcactggtca taaccgacag cttggagatg
10381tcaaacatct cttgaaagct atggctaagg atgaagaagc tgctctggca gatggtgaag
10441atgttcccta tgagaacagt gttaggcagt ttttgggtga atataaatca tggcaagaca
10501acattcaaac agttctattt acattagtcc aggctatggg tcaggttcga agtcaagaac
10561acgttgaaat gctccaggaa atcactccca ccttgaaaga actgaaaaca caaagtcaga
10621gtatctataa taatttagtg agttttgcat cacccttagt caccgatgca acaaatgaat
10681gttcgagtcc aacgtcatct gctacttatc agccatcctt cgctgcagca gtccggagta
10741acactggcca gaagactcag cctgatgtca tgtcacagaa tgctagaaag ctgatccaga
10801aaaatcttgc tacatcagct gatactccac caagcaccgt tccaggaact ggcaagagtg
10861ttgcttgtag tcctaaaaag gcagtcagag accctaaaac tgggaaagcg gtgcaagaga
10921gaaactccTA TGCAGTGAGT GTGTGGAAGA GAGTGAAAGC CAAGTTAGAG GGCCGAGATG
10981TTGATCCGAA TAGGAGGATG TCAGTTGCTG AACAGGTTGA CTATGTCATT AAGGAAGCAA
11041CTAATCTAGA TAACTTGGCT CAGCTGTATG AAGGTTGGAC AGCCTGGGTG TGAAAGGGTG
11101GGCGCGCCGA CCCAGCTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
11161CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
11221TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAACGTTG GAAAGGGAAA GCTGGCTTAC
11281GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

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