Construct: ORF TRCN0000488414
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF020172.1_s317c1
- DNA Barcode:
- CCCTCATTAATCGTGTGGTTAAAT
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- CSNK1A1 (1452)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000488414
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001892.6 | 99.9% | 99.7% | 988A>T |
| 2 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001271741.2 | 95.8% | 96.1% | 972_974delTTT;975_976ins39 |
| 3 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001025105.3 | 92.2% | 92% | 455_538del;1072A>T |
| 4 | human | 122011 | CSNK1A1L | casein kinase 1 alpha 1 like | NM_145203.6 | 91.3% | 90.5% | (many diffs) |
| 5 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001271742.2 | 67.8% | 67.6% | 0_1ins267;188_271del;805A>T |
| 6 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526388.2 | 94.8% | 99.7% | (many diffs) |
| 7 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | NM_146087.2 | 90.8% | 96.1% | (many diffs) |
| 8 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526384.2 | 87.5% | 92% | (many diffs) |
| 9 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526385.2 | 87.3% | 91.7% | (many diffs) |
| 10 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_011247048.2 | 85.3% | 89.5% | (many diffs) |
| 11 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526383.3 | 85.2% | 89.5% | (many diffs) |
| 12 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526386.3 | 85.1% | 88.3% | (many diffs) |
| 13 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526387.2 | 83.8% | 88.7% | (many diffs) |
| 14 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XR_386023.3 | 13.8% | (many diffs) | |
| 15 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XR_386022.3 | 13.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 1083
- ORF length:
- 1011
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catggcgagt agcagcggct ccaaggctga attcattgtc ggagggaaat 121 ataaactggt acggaagatc gggtctggct ccttcgggga catctatttg gcgatcaaca 181 tcaccaacgg cgaggaagtg gcagtgaagc tagaatctca gaaggccagg catccccagt 241 tgctgtacga gagcaagctc tataagattc ttcaaggtgg ggttggcatc ccccacatac 301 ggtggtatgg tcaggaaaaa gactacaatg tactagtcat ggatcttctg ggacctagcc 361 tcgaagacct cttcaatttc tgttcaagaa ggttcacaat gaaaactgta cttatgttag 421 ctgaccagat gatcagtaga attgaatatg tgcatacaaa gaattttata cacagagaca 481 ttaaaccaga taacttccta atgggtattg ggcgtcactg taataagtta ttccttattg 541 attttggttt ggccaaaaag tacagagaca acaggacaag gcaacacata ccatacagag 601 aagataaaaa cctcactggc actgcccgat atgctagcat caatgcacat cttggtattg 661 agcagagtcg ccgagatgac atggaatcat taggatatgt tttgatgtat tttaatagaa 721 ccagcctgcc atggcaagGG CTAAAGGCTG CAACAAAGAA ACAAAAATAT GAAAAGATTA 781 GTGAAAAGAA GATGTCCACG CCTGTTGAAG TTTTATGTAA GGGGTTTCCT GCAGAATTTG 841 CGATGTACTT AAACTATTGT CGTGGGCTAC GCTTTGAGGA AGCCCCAGAT TACATGTATC 901 TGAGGCAGCT ATTCCGCATT CTTTTCAGGA CCCTGAACCA TCAATATGAC TACACATTTG 961 ATTGGACAAT GTTAAAGCAG AAAGCAGCAC AGCAGGCAGC CTCTTCCAGT GGGCAGGGTC 1021 AGCAGGCCCA AACCCCCACA GGCAAGCAAA CTGACAAATC CAAGAGTAAC ATGAAAGGTT 1081 TCTGAGACCC AGCTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC 1141 TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT 1201 CTTGGCTTTA TATATCTTGT GGAAAGGACG ACCCTCATTA ATCGTGTGGT TAAATACGCG 1261 TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt