Construct: ORF TRCN0000488459
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF020369.1_s317c1
- DNA Barcode:
- AGGGTACAACTCATGCCAATTGTA
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- CSNK1A1L (122011)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000488459
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 122011 | CSNK1A1L | casein kinase 1 alpha 1 like | NM_145203.6 | 99.8% | 99.4% | 126C>A;674G>A |
| 2 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001892.6 | 91.6% | 91% | (many diffs) |
| 3 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001271741.2 | 88.3% | 89% | (many diffs) |
| 4 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001025105.3 | 84.6% | 84.1% | (many diffs) |
| 5 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001271742.2 | 63.4% | 63.8% | (many diffs) |
| 6 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526388.2 | 90.1% | 91% | (many diffs) |
| 7 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | NM_146087.2 | 86.7% | 89% | (many diffs) |
| 8 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526384.2 | 83.1% | 84.1% | (many diffs) |
| 9 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526385.2 | 83.1% | 84.1% | (many diffs) |
| 10 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526386.3 | 81.3% | 81.4% | (many diffs) |
| 11 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526383.3 | 81.3% | 82.3% | (many diffs) |
| 12 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_011247048.2 | 80.8% | 82% | (many diffs) |
| 13 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526387.2 | 80.1% | 82.1% | (many diffs) |
| 14 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XR_386023.3 | 13.1% | (many diffs) | |
| 15 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XR_386022.3 | 12.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 1083
- ORF length:
- 1011
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catgacaaac aacagcggct ccaaagccga actcgttgtg ggagggaaat 121 acaaactggt gcggaagatc gggtctggct cctttggaga cgtttatctg ggcatcacca 181 ccaccaacgg cgaggaagta gcagtgaagc tggaatctca gaaggtcaag cacccccagt 241 tgctgtatga gagcaaactc tacacgattc ttcaaggtgg ggttggcatc ccccacatgc 301 actggtatgg tcaggaaaaa gacaacaatg tgctagtcat ggaccttctg ggacccagcc 361 tcgaagacct ctttaatttc tgttcaagaa ggttcaccat gaaaactgta cttatgttag 421 ccgaccagat gatcagcaga attgaatacg tgcatacaaa gaattttcta caccgagaca 481 ttaaaccaga taacttcctg atgggtactg ggcgtcactg taataagttg ttccttattg 541 attttggttt ggccaaaaag tacagagaca acaggaccag gcaacacata ccgtacagag 601 aagataaaca cctcattggc actgtccgat atgccagcat caatgcacat cttggtattg 661 agcagagccg ccgagatgac atggaatcct taggctacgt tttcatgtat tttaatagaa 721 ccagcctgcc gtggcaagga ctaaaggcta tgacaaaaaa acaaaaatat gaaaagatta 781 gtgagaagaa gatgtccacc cCTGTTGAAG TTTTATGTAA GGGGTTTCCT GCAGAATTCG 841 CCATGTACTT GAACTACTGT CGTGGGCTGC GCTTTGAGGA AGTCCCAGAT TACATGTATC 901 TGAGGCAGCT ATTCCGCATT CTTTTCAGGA CCCTGAACCA CCAATATGAC TACACATTTG 961 ATTGGACGAT GTTAAAGCAG AAAGCAGCAC AGCAGGCAGC CTCTTCCAGT GGGCAGGGTC 1021 AGCAGGCCCA AACCCAGACA GGCAAGCAAA CTGAAAAAAA CAAGAATAAT GTGAAAGATA 1081 ACTAGGACCC AGCTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC 1141 TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT 1201 CTTGGCTTTA TATATCTTGT GGAAAGGACG AAGGGTACAA CTCATGCCAA TTGTAACGCG 1261 TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt