Construct: ORF TRCN0000488481

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF020878.1_s317c1
DNA Barcode:
TATTCTCGTATAACACGAGCTGTG
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
ACKR3 (57007)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488481
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57007 ACKR3 atypical chemokine receptor 3 NM_020311.3 99.9% 100% 162C>T
2 human 57007 ACKR3 atypical chemokine receptor 3 XM_005246097.3 99.9% 100% 162C>T
3 human 57007 ACKR3 atypical chemokine receptor 3 XM_005246098.3 99.9% 100% 162C>T
4 human 57007 ACKR3 atypical chemokine receptor 3 XM_017004516.2 99.9% 100% 162C>T
5 mouse 12778 Ackr3 atypical chemokine receptor 3 NM_001271607.1 88.5% 92.8% (many diffs)
6 mouse 12778 Ackr3 atypical chemokine receptor 3 NM_007722.4 88.5% 92.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
72
ORF end:
1158
ORF length:
1086
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcac catggatctg catctcttcg actactcaga gccagggaac ttctcggaca
121tcagctggcc atgcaacagc agcgactgca tcgtggtgga cacggtgatg tgtcccaaca
181tgcccaacaa aagcgtcctg ctctacacgc tctccttcat ttacattttc attttcgtca
241tcggcatgat tgccaactcc gtggtggtct gggtgaatat ccaggccaag accacaggct
301atgacacgca ctgctacatc ttgaacctgg ccattgccga cctgtgggtt gtcctcacca
361tcccagtctg ggtggtcagt ctcgtgcagc acaaccagtg gcccatgggc gagctcacgt
421gcaaagtcac acacctcatc ttctccatca acctcttcgg cagcattttc ttcctcacgt
481gcatgagcgt ggaccgctac ctctccatca cctacttcac caacaccccc agcagcagga
541agaagatggt acgccgtgtc gtctgcatcc tggtgtggct gctggccttc tgcgtgtctc
601tgcctgacac ctactacctg aagaccgtca cgtctgcgtc caacaatgag acctactgcc
661ggtccttcta ccccgagcac agcatcaagg agtggctgat cggcatggag ctggtctccg
721ttgtcttggg ctttgccgtt cccttctcca ttatcgctgt cttctacttc ctgctggcca
781gagccatctc ggcgtccagt gaccaggaga agcacagcag ccggaagatc atcttctccT
841ACGTGGTGGT CTTCCTTGTC TGCTGGCTGC CCTACCACGT GGCGGTGCTG CTGGACATCT
901TCTCCATCCT GCACTACATC CCTTTCACCT GCCGGCTGGA GCACGCCCTC TTCACGGCCC
961TGCATGTCAC ACAGTGCCTG TCGCTGGTGC ACTGCTGCGT CAACCCTGTC CTCTACAGCT
1021TCATCAATCG CAACTACAGG TACGAGCTGA TGAAGGCCTT CATCTTCAAG TACTCGGCCA
1081AAACAGGGCT CACCAAGCTC ATCGATGCCT CCAGAGTCTC AGAGACGGAG TACTCTGCCT
1141TGGAGCAGAG CACCAAATAG GACCCAGCTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
1201CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
1261AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGATATT CTCGTATAAC
1321ACGAGCTGTG ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)