Construct: ORF TRCN0000488785

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019826.1_s317c1
DNA Barcode:
AACGCGACCCGCAAATTTGATTCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
VIPR2 (7434)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488785
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7434 VIPR2 vasoactive intestinal pepti... NM_003382.5 99.8% 99.7% 393A>C;1314_1315insG
2 human 7434 VIPR2 vasoactive intestinal pepti... XM_005249561.3 92.8% 90.8% (many diffs)
3 human 7434 VIPR2 vasoactive intestinal pepti... XM_006716107.2 89.8% 87% (many diffs)
4 human 7434 VIPR2 vasoactive intestinal pepti... XM_024446914.1 85% 74.4% (many diffs)
5 human 7434 VIPR2 vasoactive intestinal pepti... XM_024446915.1 85% 74.4% (many diffs)
6 human 7434 VIPR2 vasoactive intestinal pepti... NM_001308259.1 83.2% 76.3% (many diffs)
7 human 7434 VIPR2 vasoactive intestinal pepti... NM_001304522.1 81.6% 81.5% 356_357ins240;1074_1075insG
8 human 7434 VIPR2 vasoactive intestinal pepti... XM_024446917.1 81.4% 79.8% (many diffs)
9 human 7434 VIPR2 vasoactive intestinal pepti... XM_024446916.1 79.5% 78.4% (many diffs)
10 human 7434 VIPR2 vasoactive intestinal pepti... XM_011516550.2 74.5% 65.1% (many diffs)
11 human 7434 VIPR2 vasoactive intestinal pepti... XM_006716108.3 72.5% 68.4% (many diffs)
12 human 7434 VIPR2 vasoactive intestinal pepti... XM_017012580.1 68.4% 68.3% 0_1ins414;900_901insG
13 human 7434 VIPR2 vasoactive intestinal pepti... XM_024446918.1 68.4% 68.3% 0_1ins414;900_901insG
14 human 7434 VIPR2 vasoactive intestinal pepti... NR_130758.1 30.7% 1_186del;1330_1663del;1835_4278delinsG
15 mouse 22355 Vipr2 vasoactive intestinal pepti... NM_009511.2 81.5% 85% (many diffs)
16 mouse 22355 Vipr2 vasoactive intestinal pepti... XM_011244102.1 75.3% 72.8% (many diffs)
17 mouse 22355 Vipr2 vasoactive intestinal pepti... XM_006515806.3 72.4% 75.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1386
ORF length:
1317
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcaccat gcggacgctg ctgcctcccg cgctgctgac ctgctggctg ctcgcccccg
121tgaacagcat tcacccagaa tgccgatttc atctggaaat acaggaggaa gaaacaaaat
181gtgcagagct tctgaggtct caaacagaaa aacacaaagc ctgcagtggc gtctgggaca
241acatcacgtg ctggcggcct gccaatgtgg gagagaccgt cacggtgccc tgcccaaaag
301tcttcagcaa tttttacagc aaagcaggaa acataagcaa aaactgtacg agtgacggat
361ggtcagagac gttcccagat ttcgtcgatg cctgtggcta cagcgacccg gaggatgaga
421gcaagatcac gttttatatt ctggtgaagg ccatttatac cctgggctac agtgtctctc
481tgatgtctct tgcaacagga agcataattc tgtgcctctt caggaagctg cactgcacca
541ggaattacat ccacctgaac ctgttcctgt ccttcatcct gagagccatc tcagtgctgg
601tcaaggacga cgttctctac tccagctctg gcacgttgca ctgccctgac cagccatcct
661cctgggtggg ctgcaagctg agcctggtct tcctgcagta ctgcatcatg gccaacttct
721tctggctgct ggtggagggg ctctacctcc acaccctcct ggtggccatg ctccccccta
781gaaggtgctt cctggcctac ctcctgatcg gatggggcct ccccaccgtc tgcatcggtg
841catggactgc ggccaggctc tacttagaag acaccggttg ctgggataca aacgaccaca
901gtgtgccctg gtgggtcata cgaataccga ttttaatttc catcatcgtc aattttgtcc
961ttttcattag tattatacga attttgctgc agaagttaac atccccagat gtcGGCGGCA
1021ACGACCAGTC TCAGTACAAG AGGCTGGCCA AGTCCACGCT CCTGCTTATC CCGCTGTTCG
1081GCGTCCACTA CATGGTGTTT GCCGTGTTTC CCATCAGCAT CTCCTCCAAA TACCAGATAC
1141TGTTTGAGCT GTGCCTCGGG TCGTTCCAGG GCCTGGTGGT GGCCGTCCTC TACTGTTTCC
1201TGAACAGTGA GGTGCAGTGC GAGCTGAAGC GAAAATGGCG AAGCCGGTGC CCGACCCCGT
1261CCGCGAGCCG GGATTACAGG GTCTGCGGTT CCTCCTTCTC CCGCAACGGC TCGGAGGGCG
1321CCCTGCAGTT CCACCGCGGC TCCCGCGCCC AGTCCTTCCT GCAAACGGAG ACCTCGGTCA
1381TCGACCCAGC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
1441TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
1501GGCTTTATAT ATCTTGTGGA AAGGACGAAA CGCGACCCGC AAATTTGATT CCACGCGTTA
1561AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)

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