Construct: ORF TRCN0000488978

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019187.1_s317c1
DNA Barcode:
TCGACATAAATAATATTCCAAATA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RXFP1 (59350)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488978
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 59350 RXFP1 relaxin family peptide rece... NM_021634.4 100% 100%
2 human 59350 RXFP1 relaxin family peptide rece... XM_017008518.2 99.8% 99.8% 1043_1044insCAG
3 human 59350 RXFP1 relaxin family peptide rece... XM_011532176.2 96.8% 96.8% 754_755ins72
4 human 59350 RXFP1 relaxin family peptide rece... NM_001253727.1 96.5% 96.4% 287_367del
5 human 59350 RXFP1 relaxin family peptide rece... XM_011532174.1 96.4% 96.3% 287_367del;1124_1125insCAG
6 human 59350 RXFP1 relaxin family peptide rece... NM_001253728.2 95.6% 95.5% 187_188ins99
7 human 59350 RXFP1 relaxin family peptide rece... NM_001253729.2 93.6% 93.5% 898_899ins144
8 human 59350 RXFP1 relaxin family peptide rece... XM_011532175.1 93.4% 93.3% 287_367del;835_836ins72
9 human 59350 RXFP1 relaxin family peptide rece... XM_017008517.1 93.3% 93.2% 287_367del;835_836ins72;1052_1053insCAG
10 human 59350 RXFP1 relaxin family peptide rece... NM_001363776.1 89.2% 89.2% 0_1ins243
11 human 59350 RXFP1 relaxin family peptide rece... XM_017008522.1 89.1% 89.1% 0_1ins243;800_801insCAG
12 human 59350 RXFP1 relaxin family peptide rece... XM_017008519.1 86.2% 86% 0_1ins243;44_124del
13 human 59350 RXFP1 relaxin family peptide rece... XM_017008520.1 86.2% 86% 0_1ins243;44_124del
14 human 59350 RXFP1 relaxin family peptide rece... NM_001253730.1 82.6% 82.6% 0_1ins390;653_654insCAG
15 human 59350 RXFP1 relaxin family peptide rece... NM_001253732.2 81.2% 79.1% (many diffs)
16 human 59350 RXFP1 relaxin family peptide rece... NM_001253733.1 78% 75.9% (many diffs)
17 human 59350 RXFP1 relaxin family peptide rece... XM_017008526.1 78% 75.9% (many diffs)
18 human 59350 RXFP1 relaxin family peptide rece... NR_045584.2 66.7% (many diffs)
19 human 59350 RXFP1 relaxin family peptide rece... NR_045581.2 61.2% 1_95del;282_305del;2391_3710del
20 human 59350 RXFP1 relaxin family peptide rece... NR_045580.2 60.7% 1_95del;282_334del;2420_3739del
21 human 59350 RXFP1 relaxin family peptide rece... NR_045583.2 56.5% (many diffs)
22 human 59350 RXFP1 relaxin family peptide rece... NR_045582.2 56.1% (many diffs)
23 human 59350 RXFP1 relaxin family peptide rece... NR_045579.2 49.7% (many diffs)
24 human 59350 RXFP1 relaxin family peptide rece... XM_017008523.2 49.6% 49.4% (many diffs)
25 human 59350 RXFP1 relaxin family peptide rece... XM_011532179.2 47.9% 47.5% (many diffs)
26 human 59350 RXFP1 relaxin family peptide rece... XM_017008524.2 46.5% 46.2% (many diffs)
27 human 59350 RXFP1 relaxin family peptide rece... XM_017008525.1 45.3% 44.9% (many diffs)
28 mouse 381489 Rxfp1 relaxin/insulin-like family... NM_212452.1 85.9% 85% (many diffs)
29 mouse 381489 Rxfp1 relaxin/insulin-like family... XM_006501629.2 85.7% 84.9% (many diffs)
30 mouse 381489 Rxfp1 relaxin/insulin-like family... XM_006501630.2 71.8% 71.8% (many diffs)
31 mouse 381489 Rxfp1 relaxin/insulin-like family... XR_375538.2 24.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
75
ORF end:
2346
ORF length:
2271
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcgc caccatgaca tctggttctg tcttcttcta catcttaatt tttggaaaat
121atttttctca tgggggtgga caggatgtca agtgctccct tggctatttc ccctgtggga
181acatcacaaa gtgcttgcct cagctcctgc actgtaacgg tgtggacgac tgcgggaatc
241aggccgatga ggacaactgt ggagacaaca atggatggtc tctgcaattt gacaaatatt
301ttgccagtta ctacaaaatg acttcccaat atccttttga ggcagaaaca cctgaatgtt
361tggtcggttc tgtgccagtg caatgtcttt gccaaggtct ggagcttgac tgtgatgaaa
421ccaatttacg agctgttcca tcggtttctt caaatgtgac tgcaatgtca cttcagtgga
481acttaataag aaagcttcct cctgattgct tcaagaatta tcatgatctt cagaagctgt
541acctgcaaaa caataagatt acatccatct ccatctatgc tttcagagga ctgaatagcc
601ttactaaact gtatctcagt cataacagaa taaccttcct gaagccgggt gtttttgaag
661atcttcacag actagaatgg ctgataattg aagataatca cctcagtcga atttccccac
721caacatttta tggactaaat tctcttattc tcttagtcct gatgaataac gtcctcaccc
781gtttacctga taaacctctc tgtcaacaca tgccaagact acattggctg gaccttgaag
841gcaaccatat ccataattta agaaatttga cttttatttc ctgcagtaat ttaactgttt
901tagtgatgag gaaaaacaaa attaatcact taaatgaaaa tacttttgca cctctccaga
961aactggatga attggattta ggaagtaata agattgaaaa tcttccaccg cttatattca
1021aggacctgaa ggagctgtca caattgaatc tttcctataa tccaatccag aaaattcaag
1081caaaccaatt tgattatctt gtcaaactca agtctctcag cctagaaggg attgaaattt
1141caaatatcca acaaaggatg tttagacctc ttatgaatct ctctcacata tattttaaga
1201aattccagta ctgtgggtat gcaccacatg ttcgcagctg taaaccaaac actgatggaa
1261tttcatctct agagaatctc ttggcaagca ttattcagag agtatttgtc tgggttgtat
1321ctgcagttac ctgctttgga aacatttttg tcatttgcat gcgaccttat atcaggtctg
1381agaacaagct gtatgccatg tcaatcattt ctctctgctg tgccgactgc ttaatgggaa
1441tatatttatt cgtgatcgga ggctttgacc taaagtttcg tggagaatac aataagcatg
1501cgcagctgtg gatggagagt actcattgtc agcttgtagg atctttggcc attctgtcca
1561cagaagtatc agttttactg ttaacatttc tgacattgga aaaatacatc tgcattgtct
1621atccttttag atgtgtgaga cctggaaaat gcagaacaat tacagttctg attctcattt
1681ggattactgg ttttatagtg gctttcattc cattgagcaa taaggaattt ttcaaaaact
1741actatggcac caatggagta tgcttccctc ttcattcaga agatacagaa agtattggag
1801cccagattta ttcagtggca atttttcttg gtattaattt ggccgcattt atcatcatag
1861ttttttccta tggaagcatg ttttatagtg ttcatcaaag tgccataaca gcaactgaaa
1921tacggaatca agttaaaaaa gagatgatcc ttgccaaacg ttttttcttt atagtattta
1981ctgatgcatt atgctGGATA CCCATTTTTG TAGTGAAATT TCTTTCACTG CTTCAGGTAG
2041AAATACCAGG TACCATAACC TCTTGGGTAG TGATTTTTAT TCTGCCCATT AACAGTGCTT
2101TGAACCCAAT TCTCTATACT CTGACCACAA GACCATTTAA AGAAATGATT CATCGGTTTT
2161GGTATAACTA CAGACAAAGA AAATCTATGG ACAGCAAAGG TCAGAAAACA TATGCTCCAT
2221CATTCATCTG GGTGGAAATG TGGCCACTGC AGGAGATGCC ACCTGAGTTA ATGAAGCCGG
2281ACCTTTTCAC ATACCCCTGT GAAATGTCAC TGATTTCTCA ATCAACGAGA CTCAATTCCT
2341ATTCAGACCC AGCTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC
2401TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT
2461CTTGGCTTTA TATATCTTGT GGAAAGGACG ATCGACATAA ATAATATTCC AAATAACGCG
2521TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)