Transcript: Human NM_001253733.1

Homo sapiens relaxin family peptide receptor 1 (RXFP1), transcript variant 7, mRNA.

Source:
NCBI, updated 2019-08-03
Taxon:
Homo sapiens (human)
Gene:
RXFP1 (59350)
Length:
3886
CDS:
744..2549

Additional Resources:

NCBI RefSeq record:
NM_001253733.1
NBCI Gene record:
RXFP1 (59350)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001253733.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000363201 ATAACGTCCTCACCCGTTTAC pLKO_005 1039 CDS 100% 10.800 15.120 N RXFP1 n/a
2 TRCN0000011699 GCCGACTGCTTAATGGGAATA pLKO.1 1623 CDS 100% 10.800 15.120 N RXFP1 n/a
3 TRCN0000011701 GCAACTGAAATACGGAATCAA pLKO.1 2112 CDS 100% 5.625 7.875 N RXFP1 n/a
4 TRCN0000011698 GCCCATTAACAGTGCTTTGAA pLKO.1 2285 CDS 100% 5.625 7.875 N RXFP1 n/a
5 TRCN0000011697 GCCGCATTTATCATCATAGTT pLKO.1 2043 CDS 100% 5.625 7.875 N RXFP1 n/a
6 TRCN0000011700 CCTCACCCGTTTACCTGATAA pLKO.1 1046 CDS 100% 13.200 10.560 N RXFP1 n/a
7 TRCN0000363173 CATTTGCATGCGACCTTATAT pLKO_005 1553 CDS 100% 15.000 10.500 N RXFP1 n/a
8 TRCN0000363150 TAATCACCTCAGTCGAATTTC pLKO_005 968 CDS 100% 13.200 9.240 N RXFP1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001253733.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03880 pDONR223 100% 78% 75.9% None (many diffs) n/a
2 ccsbBroad304_03880 pLX_304 0% 78% 75.9% V5 (many diffs) n/a
3 TRCN0000469306 AACGATTACCCTCGTCGGAACCGT pLX_317 15.4% 78% 75.9% V5 (many diffs) n/a
4 TRCN0000488978 TCGACATAAATAATATTCCAAATA pLX_317 15.6% 78% 75.9% V5 (many diffs) n/a
5 TRCN0000489641 TGAGCCTACTCTGCAACGTGAGTC pLX_317 19.6% 78% 75.9% V5 (not translated due to prior stop codon) (many diffs) n/a
Download CSV