Transcript: Human NR_045583.2

Homo sapiens relaxin family peptide receptor 1 (RXFP1), transcript variant 12, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
RXFP1 (59350)
Length:
3626
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_045583.2
NBCI Gene record:
RXFP1 (59350)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_045583.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000363201 ATAACGTCCTCACCCGTTTAC pLKO_005 730 3UTR 100% 10.800 15.120 N RXFP1 n/a
2 TRCN0000011699 GCCGACTGCTTAATGGGAATA pLKO.1 1383 3UTR 100% 10.800 15.120 N RXFP1 n/a
3 TRCN0000011701 GCAACTGAAATACGGAATCAA pLKO.1 1872 3UTR 100% 5.625 7.875 N RXFP1 n/a
4 TRCN0000011698 GCCCATTAACAGTGCTTTGAA pLKO.1 2045 3UTR 100% 5.625 7.875 N RXFP1 n/a
5 TRCN0000011697 GCCGCATTTATCATCATAGTT pLKO.1 1803 3UTR 100% 5.625 7.875 N RXFP1 n/a
6 TRCN0000011700 CCTCACCCGTTTACCTGATAA pLKO.1 737 3UTR 100% 13.200 10.560 N RXFP1 n/a
7 TRCN0000363173 CATTTGCATGCGACCTTATAT pLKO_005 1313 3UTR 100% 15.000 10.500 N RXFP1 n/a
8 TRCN0000363150 TAATCACCTCAGTCGAATTTC pLKO_005 659 3UTR 100% 13.200 9.240 N RXFP1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_045583.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03880 pDONR223 100% 56.5% None (many diffs) n/a
2 ccsbBroad304_03880 pLX_304 0% 56.5% V5 (many diffs) n/a
3 TRCN0000469306 AACGATTACCCTCGTCGGAACCGT pLX_317 15.4% 56.5% V5 (many diffs) n/a
4 TRCN0000488978 TCGACATAAATAATATTCCAAATA pLX_317 15.6% 56.5% V5 (many diffs) n/a
5 TRCN0000489641 TGAGCCTACTCTGCAACGTGAGTC pLX_317 19.6% 56.5% V5 (not translated due to prior stop codon) (many diffs) n/a
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