Construct: ORF TRCN0000489315
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021306.1_s317c1
- DNA Barcode:
- CCTGTATGGTATTGTCGGAGACCT
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- ART3 (419)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000489315
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 419 | ART3 | ADP-ribosyltransferase 3 | NM_001130016.2 | 99.9% | 99.7% | 1088C>T |
| 2 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454056.1 | 97.3% | 97.1% | 890_891ins30;1058C>T |
| 3 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454055.1 | 97.1% | 97% | 999_1031del;1121C>T |
| 4 | human | 419 | ART3 | ADP-ribosyltransferase 3 | NM_001179.5 | 97% | 96.9% | 964_965ins33;1055C>T |
| 5 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454057.1 | 97% | 96.6% | 1003_1004ins33;1055C>T |
| 6 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454059.1 | 94.5% | 94.3% | 890_891ins30;934_935ins33;1025C>T |
| 7 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454058.1 | 94.5% | 94% | 890_891ins30;973_974ins33;1025C>T |
| 8 | human | 419 | ART3 | ADP-ribosyltransferase 3 | NM_001130017.2 | 94.2% | 93.8% | 970_971ins66;1022C>T |
| 9 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454060.1 | 94.2% | 93.8% | 970_971ins66;1022C>T |
| 10 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454061.1 | 91.6% | 91.2% | 890_891ins30;940_941ins66;992C>T |
| 11 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454062.1 | 91.4% | 91% | 937_938ins99;989C>T |
| 12 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454063.1 | 91.4% | 91% | 937_938ins99;989C>T |
| 13 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_017008210.2 | 89.3% | 88.9% | 0_1ins90;913_914ins33;965C>T |
| 14 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_017008206.2 | 80% | 74% | (many diffs) |
| 15 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454050.1 | 80% | 74% | (many diffs) |
| 16 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454051.1 | 80% | 74% | (many diffs) |
| 17 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454052.1 | 80% | 74% | (many diffs) |
| 18 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454053.1 | 80% | 74% | (many diffs) |
| 19 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454054.1 | 77.8% | 71.9% | (many diffs) |
| 20 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_017008208.2 | 73.5% | 67.6% | (many diffs) |
| 21 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XR_002959732.1 | 38.4% | (many diffs) | |
| 22 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XR_002959733.1 | 33.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 1239
- ORF length:
- 1167
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catgaagacg ggacattttg aaatagtcac catgctgctg gcaaccatga 121 ttctagtgga cattttccag gtgaaggctg aagtgttaga catggcagat aatgcatttg 181 atgatgaata cctgaaatgt acggacagga tggaaattaa atacgttccc caactgctaa 241 aggaggaaaa agcaagccac cagcaattag atactgtgtg ggaaaatgca aaagccaaat 301 gggcagcccg aaagactcaa atctttctcc ctatgaattt taaggataac catggaatag 361 ccctgatggc atatatttcc gaagctcaag agcaaactcc cttttaccat ctgttcagtg 421 aagctgtgaa gatggctggc caatctcgag aagattatat ctatggcttc cagttcaaag 481 ctttccactt ttacctcaca agagccctgc agttgctgag aaaaccttgt gaggccagtt 541 ccaaaactgt ggtatataga acaagccagg gcacttcatt tacatttgga gggctaaacc 601 aagccaggtt tggccatttt accttggcat attcagccaa acctcaggct gctaatgacc 661 agctcactgt gttatccatc tacacatgcc ttggagttga cattgaaaat tttcttgata 721 aagaaagtga aagaattact ttaatacctc tgaatgaggt ttttcaagtg tcacaggagg 781 gggctggcaa taaccttatc cttcaaagca taaacaagac ctgcagccat tatgagtgtg 841 catttctagg tggactaaaa accgaaaact gtattgagaa CCTAGAATAT TTTCAACCCA 901 TCTATGTCTA CAACCCTGGT GAGAAAAACC AGAAGCTTGA AGACCATAGT GAGAAAAACT 961 GGAAGCTTGA AGACCATGGT GAGAAAAACC AGAAGCTTGA AGACCATGGT GTGAAAATCC 1021 TTGAACCCAC CCAAATACCT GGAATGAAAA TTCCAGAACC TTTTCCACTA CCTGAAGATA 1081 AAAGTCAAGG AAATATCAAC AATCCTACTC CAGGTCCAGT TCCTGTTCCA GGTCCCAAAA 1141 GCCATCCTTC TGCATCCTTG GGCAAACTGC TGCTTCCACA GTTTGGGATG GTCATCATTT 1201 TAATCAGTGT TTCTGCTATA AATCTCTTTG TTGCTCTGTA AACCCAGCTT TCTTGTACAA 1261 AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA 1321 ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA 1381 GGACGACCTG TATGGTATTG TCGGAGACCT ACGCGTTAAG TCgacaatca acctctggat 1441 tacaaaattt gtgaaagatt