Construct: ORF TRCN0000489725

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021825.1_s317c1
DNA Barcode:
CCATTTGTTTAATCGGTTTCATTC
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
APP (351)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000489725
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 351 APP amyloid beta precursor protein NM_201414.3 100% 100%
2 human 351 APP amyloid beta precursor protein NM_001204303.2 97.4% 97.4% 1682_1683ins54
3 human 351 APP amyloid beta precursor protein NM_001136131.2 94.9% 94.9% 0_1ins105
4 human 351 APP amyloid beta precursor protein NM_201413.3 92.5% 92.4% 866_1033del
5 human 351 APP amyloid beta precursor protein NM_001136129.3 91.9% 91.9% 57_58ins168
6 human 351 APP amyloid beta precursor protein NM_000484.4 90.2% 90.1% 866_1090del
7 human 351 APP amyloid beta precursor protein NM_001204302.2 90.1% 90% 866_1033del;1850_1851ins54
8 human 351 APP amyloid beta precursor protein NM_001136016.3 89.8% 90% (many diffs)
9 human 351 APP amyloid beta precursor protein NM_001204301.2 87.9% 87.7% 866_1090del;1907_1908ins54
10 human 351 APP amyloid beta precursor protein NM_001136130.3 82.9% 82.8% 57_58ins168;698_922del
11 human 351 APP amyloid beta precursor protein XM_024452075.1 65% 64.7% (many diffs)
12 mouse 11820 App amyloid beta (A4) precursor... NM_007471.3 89.2% 97.4% (many diffs)
13 mouse 11820 App amyloid beta (A4) precursor... XM_006522873.2 86.8% 94.8% (many diffs)
14 mouse 11820 App amyloid beta (A4) precursor... NM_001198824.1 82.6% 90% (many diffs)
15 mouse 11820 App amyloid beta (A4) precursor... NM_001198823.1 80.5% 87.7% (many diffs)
16 mouse 11820 App amyloid beta (A4) precursor... NM_001198825.1 80.3% 87.6% (many diffs)
17 mouse 11820 App amyloid beta (A4) precursor... NM_001198826.1 78.3% 85.4% (many diffs)
18 mouse 11820 App amyloid beta (A4) precursor... XM_006522874.1 58% 62% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2154
ORF length:
2085
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcaccat gctgcccggt ttggcactgc tcctgctggc cgcctggacg gctcgggcgc
121tggaggtacc cactgatggt aatgctggcc tgctggctga accccagatt gccatgttct
181gtggcagact gaacatgcac atgaatgtcc agaatgggaa gtgggattca gatccatcag
241ggaccaaaac ctgcattgat accaaggaag gcatcctgca gtattgccaa gaagtctacc
301ctgaactgca gatcaccaat gtggtagaag ccaaccaacc agtgaccatc cagaactggt
361gcaagcgggg ccgcaagcag tgcaagaccc atccccactt tgtgattccc taccgctgct
421tagttggtga gtttgtaagt gatgcccttc tcgttcctga caagtgcaaa ttcttacacc
481aggagaggat ggatgtttgc gaaactcatc ttcactggca caccgtcgcc aaagagacat
541gcagtgagaa gagtaccaac ttgcatgact acggcatgtt gctgccctgc ggaattgaca
601agttccgagg ggtagagttt gtgtgttgcc cactggctga agaaagtgac aatgtggatt
661ctgctgatgc ggaggaggat gactcggatg tctggtgggg cggagcagac acagactatg
721cagatgggag tgaagacaaa gtagtagaag tagcagagga ggaagaagtg gctgaggtgg
781aagaagaaga agccgatgat gacgaggacg atgaggatgg tgatgaggta gaggaagagg
841ctgaggaacc ctacgaagaa gccacagaga gaaccaccag cattgccacc accaccacca
901ccaccacaga gtctgtggaa gaggtggttc gagttcctac aacagcagcc agtacccctg
961atgccgttga caagtatctc gagacacctg gggatgagaa tgaacatgcc catttccaga
1021aagccaaaga gaggcttgag gccaagcacc gagagagaat gtcccaggtc atgagagaat
1081gggaagaggc agaacgtcaa gcaaagaact tgcctaaagc tgataagaag gcagttatcc
1141agcatttcca ggagaaagtg gaatctttgg aacaggaagc agccaacgag agacagcagc
1201tggtggagac acacatggcc agagtggaag ccatgctcaa tgaccgccgc cgcctggccc
1261tggagaacta catcaccgct ctgcaggctg ttcctcctcg gcctcgtcac gtgttcaata
1321tgctaaagaa gtatgtccgc gcagaacaga aggacagaca gcacacccta aagcatttcg
1381agcatgtgcg catggtggat cccaagaaag ccgctcagat ccggtcccag gttatgacac
1441acctccgtgt gatttatgag cgcatgaatc agtctctctc cctgctctac aacgtgcctg
1501cagtggccga ggagattcag gatgaagttg atgagctgct tcagaaagag caaaactatt
1561cagatgacgt cttggccaac atgattagtg aaccaaggat cagttacgga aacgatgctc
1621tcatgccatc tttgaccgaa acgaaaacca ccgtggagct ccttcccgtg aatggagagt
1681tcagcctgga cgatctccag ccgtggcatt cttttggggc tgactctgtg ccagccaaca
1741cagaaaacga agttgagcct gttgatgccc gccctgctgc cgaccgagga ctgaccactc
1801GACCAGGTTC TGGGTTGACA AATATCAAGA CGGAGGAGAT CTCTGAAGTG AAGATGGATG
1861CAGAATTCCG ACATGACTCA GGATATGAAG TTCATCATCA AAAATTGGTG TTCTTTGCAG
1921AAGATGTGGG TTCAAACAAA GGTGCAATCA TTGGACTCAT GGTGGGCGGT GTTGTCATAG
1981CGACAGTGAT CGTCATCACC TTGGTGATGC TGAAGAAGAA ACAGTACACA TCCATTCATC
2041ATGGTGTGGT GGAGGTTGAC GCCGCTGTCA CCCCAGAGGA GCGCCACCTG TCCAAGATGC
2101AGCAGAACGG CTACGAAAAT CCAACCTACA AGTTCTTTGA GCAGATGCAG AACTAGGACC
2161CAGCTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
2221TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
2281ATATATCTTG TGGAAAGGAC GACCATTTGT TTAATCGGTT TCATTCACGC GTTAAGTCga
2341caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)