Construct: ORF TRCN0000489911
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF019674.1_s317c1
- DNA Barcode:
- TACCACATCGATAAACGCTCGCAG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CSNK1A1L (122011)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000489911
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 122011 | CSNK1A1L | casein kinase 1 alpha 1 like | NM_145203.6 | 99.7% | 99.1% | 126C>A;674G>A;1011_1012insG |
| 2 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001892.6 | 91.6% | 90.8% | (many diffs) |
| 3 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001271741.2 | 88.2% | 88.7% | (many diffs) |
| 4 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001025105.3 | 84.5% | 83.8% | (many diffs) |
| 5 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001271742.2 | 63.4% | 63.6% | (many diffs) |
| 6 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526388.2 | 90% | 90.8% | (many diffs) |
| 7 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | NM_146087.2 | 86.6% | 88.7% | (many diffs) |
| 8 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526384.2 | 83.1% | 83.8% | (many diffs) |
| 9 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526385.2 | 83% | 83.8% | (many diffs) |
| 10 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526383.3 | 81.4% | 82.3% | (many diffs) |
| 11 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_011247048.2 | 81.3% | 82.3% | (many diffs) |
| 12 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526386.3 | 80.6% | 81.4% | (many diffs) |
| 13 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526387.2 | 80% | 81.9% | (many diffs) |
| 14 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XR_386023.3 | 13.1% | (many diffs) | |
| 15 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XR_386022.3 | 13% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 75
- ORF end:
- 1089
- ORF length:
- 1014
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcgc caccatgaca aacaacagcg gctccaaagc cgaactcgtt gtgggaggga 121 aatacaaact ggtgcggaag atcgggtctg gctcctttgg agacgtttat ctgggcatca 181 ccaccaccaa cggcgaggaa gtagcagtga agctggaatc tcagaaggtc aagcaccccc 241 agttgctgta tgagagcaaa ctctacacga ttcttcaagg tggggttggc atcccccaca 301 tgcactggta tggtcaggaa aaagacaaca atgtgctagt catggacctt ctgggaccca 361 gcctcgaaga cctctttaat ttctgttcaa gaaggttcac catgaaaact gtacttatgt 421 tagccgacca gatgatcagc agaattgaat acgtgcatac aaagaatttt ctacaccgag 481 acattaaacc agataacttc ctgatgggta ctgggcgtca ctgtaataag ttgttcctta 541 ttgattttgg tttggccaaa aagtacagag acaacaggac caggcaacac ataccgtaca 601 gagaagataa acacctcatt ggcactgtcc gatatgccag catcaatgca catcttggta 661 ttgagcagag ccgccgagat gacatggaat ccttaggcta cgttttcatg tattttaata 721 gaaccagcct gccgtggCAA GGACTAAAGG CTATGACAAA AAAACAAAAA TATGAAAAGA 781 TTAGTGAGAA GAAGATGTCC ACCCCTGTTG AAGTTTTATG TAAGGGGTTT CCTGCAGAAT 841 TCGCCATGTA CTTGAACTAC TGTCGTGGGC TGCGCTTTGA GGAAGTCCCA GATTACATGT 901 ATCTGAGGCA GCTATTCCGC ATTCTTTTCA GGACCCTGAA CCACCAATAT GACTACACAT 961 TTGATTGGAC GATGTTAAAG CAGAAAGCAG CACAGCAGGC AGCCTCTTCC AGTGGGCAGG 1021 GTCAGCAGGC CCAAACCCAG ACAGGCAAGC AAACTGAAAA AAACAAGAAT AATGTGAAAG 1081 ATAACGACCC AGCTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC 1141 TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT 1201 CTTGGCTTTA TATATCTTGT GGAAAGGACG ATACCACATC GATAAACGCT CGCAGACGCG 1261 TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt