Construct: ORF TRCN0000491296
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021388.2_s317c1
- DNA Barcode:
- ATTTTACAGAAATCAACTCCATAG
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- MOXD1 (26002)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000491296
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26002 | MOXD1 | monooxygenase DBH like 1 | XM_017010714.2 | 88.6% | 87.6% | (many diffs) |
| 2 | human | 26002 | MOXD1 | monooxygenase DBH like 1 | NM_015529.4 | 86.9% | 85.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1905
- ORF length:
- 1839
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaacaat 61 tgaccatggt atcaaatgtt cattcattcc atctcttgat gctctacgat attatcagtc 121 tacactatgc tttcctgaaa ggccagaagt tcaaagatgg actagtttcc cagggacctg 181 attccccagt tggaatactc cagccccttg gaaattcccg ggatttatac aataactcta 241 gacaacaaga ctttgtcttt aaaggtccta tgaattcttt tctctctgta tttaggtatc 301 ctgatttttc ctttccatat tttccacagg attattttac aaatgcaaat agagagttga 361 aaaaagatgc tcagcaagat taccatctag aatatgccat ggaaaatagc acacacacaa 421 taattgaatt taccagagag ctgcatacat gtgacataaa tgacaagagt ataacggata 481 gcactgtgag agtgatctgg gcctaccacc atgaagatgc aggagaagct ggtcccaagt 541 accatgactc caataggggc accaagagtt tgcggttatt gaatcctgag aaaactagtg 601 tgctatctac agccttacca tactttgatc tggtaaatca ggacgtcccc atcccaaaca 661 aagatacaac atattggtgc caaatgttta agattcctgt gttccaagaa aagcatcatg 721 taataaaggt tgagccagtg atacagagag gccatgagag tctggtgcac cacatcctgc 781 tctatcagtg cagcaacaac tttaacgaca gcgttctgga gtccggccac gagtgctatc 841 accccaacat gcccgatgca ttcctcacct gtgaaactgt gatttttgcc tgggctattg 901 gtggagaggg cttttcttat ccacctcatg ttggattatc ccttggcact ccattagatc 961 cgcattatgt gctcctagaa gtccattatg ataatcccac ttatgaggaa ggcttaatag 1021 ataattctgg actgaggtta ttttacacaa tggatataag gaaatatgat gctggggtga 1081 ttgaggctgg cctctgggtg agcctcttcc ataccatccc tccagggatg cctgagttcc 1141 agtctgaggg tcactgcact ttggagtgcc tggaagaggc tctggaagcc gaaaagccaa 1201 gtggaattca tgtgtttgct gttcttctcc atgctcacct ggctggcaga ggcatcaggc 1261 tgcgtcattt tcgaaaaggg aaggaaatga aattacttgc ctatgatgat gattttgact 1321 tcaatttcca ggagtttcag tatctaaagg aagaacaaac aatcttacca ggagataacc 1381 taattactga gtgtcgctac aacacgaaag atagagctga gatgacttgg ggaggactaa 1441 gcaccaggag tgaaatgtgt ctctcatacc ttctttatta cccaagaatt aatcttactc 1501 gatgtgcaag tattccagac attatggaac aacttcagtt cattggggtt aaggagatct 1561 acagaccagt cacgacctgg cctttcatta tcaaaagtcc caagcaatat aaaaaCCTTT 1621 CTTTCATGGA TGCTATGAAT AAGTTTAAAT GGACTAAAAA GGAAGGTCTC TCCTTCAACA 1681 AGCTGGTCCT CAGCCTGCCA GTGAATGTGA GATGTTCCAA GACAGACAAT GCTGAGTGGT 1741 CGATTCAAGG AATGACAGCA TTACCTCCAG ATATAGAAAG ACCCTATAAA GCAGAACCTT 1801 TGGTGTGTGG CACGTCTTCT TCCTCTTCCC TGCACAGAGA TTTCTCCATC AACTTGCTTG 1861 TTTGCCTTCT GCTACTCAGC TGCACGCTGA GCACCAAGAG CTTGTGAAAG CTTGACCCAG 1921 CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG 1981 ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA 2041 TATCTTGTGG AAAGGACGAA TTTTACAGAA ATCAACTCCA TAGACGCGTT AAGTCgacaa 2101 tcaacctctg gattacaaaa tttgtgaaag att