Construct: ORF TRCN0000491356

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019816.2_s317c1
DNA Barcode:
ATCGCTGCCCGGGCTCGGGTGGGT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
USP30 (84749)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000491356
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84749 USP30 ubiquitin specific peptidas... NM_032663.5 98.1% 98% 1_27del;639T>C;1551_1552insG
2 human 84749 USP30 ubiquitin specific peptidas... XM_005253962.3 97.9% 97.8% (many diffs)
3 human 84749 USP30 ubiquitin specific peptidas... NM_001301175.1 95.5% 95.4% 0_1ins66;546T>C;1458_1459insG
4 human 84749 USP30 ubiquitin specific peptidas... XM_006719653.3 95.5% 95.4% 0_1ins66;546T>C;1458_1459insG
5 human 84749 USP30 ubiquitin specific peptidas... XM_024449227.1 92.2% 92.1% (many diffs)
6 human 84749 USP30 ubiquitin specific peptidas... XM_017020048.1 91.5% 91.5% (many diffs)
7 human 84749 USP30 ubiquitin specific peptidas... XM_017020049.1 91.4% 91.3% (many diffs)
8 human 84749 USP30 ubiquitin specific peptidas... XM_017020050.1 89% 89% (many diffs)
9 human 84749 USP30 ubiquitin specific peptidas... XM_017020051.2 89% 89% (many diffs)
10 human 84749 USP30 ubiquitin specific peptidas... XM_017020052.2 89% 89% (many diffs)
11 human 84749 USP30 ubiquitin specific peptidas... XM_005253965.4 86.3% 86.2% (many diffs)
12 human 84749 USP30 ubiquitin specific peptidas... XM_024449228.1 83.5% 83.4% (many diffs)
13 human 84749 USP30 ubiquitin specific peptidas... XM_017020053.1 80.5% 80.5% (many diffs)
14 human 84749 USP30 ubiquitin specific peptidas... XM_011538894.2 72.3% 72.2% (many diffs)
15 human 84749 USP30 ubiquitin specific peptidas... XM_017020054.1 67.4% 67.3% (many diffs)
16 mouse 100756 Usp30 ubiquitin specific peptidas... NM_001033202.3 84.1% 88% (many diffs)
17 mouse 100756 Usp30 ubiquitin specific peptidas... XM_017320581.1 83.9% 87.8% (many diffs)
18 mouse 100756 Usp30 ubiquitin specific peptidas... XM_011248156.2 62.3% 64.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
84
ORF end:
1611
ORF length:
1527
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaccaa
61ctttgggaca aaaagcaggc accatgaccg cggccgacag ggccatccag cgcttcctgc
121ggaccggggc ggccgtcaga tataaagtca tgaagaactg gggagttata ggtggaattg
181ctgctgctct tgcagcagga atatatgtta tttggggtcc cattacagaa agaaagaagc
241gtagaaaagg gcttgtgcct ggccttgtta atttagggaa cacctgcttc atgaactccc
301tgctacaagg cctgtctgcc tgtcctgctt tcatcaggtg gctggaagag ttcacctccc
361agtactccag ggatcagaag gagcccccct cacaccagta tttatcctta acactcttgc
421accttctgaa agccttgtcc tgccaagaag ttactgatga tgaggtctta gatgcaagct
481gcttgttgga tgtcttaaga atgtacagat ggcagatctc atcatttgaa gaacaggatg
541ctcacgaatt attccatgtc attacctcgt cattggaaga tgagcgagac cgccagcctc
601gggtcacaca tttgtttgat gtgcattccc tggagcagca gtcagaaata actcccaaac
661aaattacctg ccgcacaaga gggtcacctc accccacatc caatcactgg aagtctcaac
721atccttttca tggaagactc actagtaata tggtctgcaa acactgtgaa caccagagtc
781ctgttcgatt tgataccttt gatagccttt cactaagtat tccagccgcc acatggggtc
841acccattgac cctggaccac tgccttcacc acttcatctc atcagaatca gtgcgggatg
901ttgtgtgtga caactgtaca aagattgaag ccaagggaac gttgaacggg gaaaaggtgg
961aacaccagag gaccactttt gttaaacagt taaaactagg gaagctccct cagtgtctct
1021gcatccacct acagcggctg agctggtcca gccacggcac gcctctgaag cggcatgagc
1081acgtgcagtt caatgagttc ctgatgatgg acatttacaa gtaccacctc cttggacata
1141aacctagtca acacaaccct aaactgaaca agaacccagg gcctacactg gagctgcagg
1201atgggccggg agcccccaca ccagttctga atcagccagg ggcccccaaa acacagattt
1261ttatgaatgg cgcctgctcc ccatctttat tgccaacgct gtcagcgccg atgcccttcc
1321ctctcccagt tgttcccgac tacagctcct ccacatacct cttccggctg atggcagttg
1381tcgtccacca tggagacatg cactctggac actttgtcac ttaccgacgg tccccacctt
1441ctgccaggaa ccctctctca actagcaatc agtggctgtg ggtctccgat gacactgtcc
1501gcaaggccag cctgcaggag gtcctgtcct ccagcgccta cctgctgttc TACGAGCGCG
1561TCCTTTCCAG GATGCAGCAC CAGAGCCAGG AGTGCAAGTC TGAAGAAGAC CCAGCTTTCT
1621TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
1681CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
1741GTGGAAAGGA CGAATCGCTG CCCGGGCTCG GGTGGGTACG CGTTAAGTCg acaatcaacc
1801tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)

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