Construct: ORF TRCN0000491426
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003469.1_s317c1
- Derived from:
- ccsbBroadEn_12982
- DNA Barcode:
- GCCGACGTGCCGGACTAACATATT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF276 (92822)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000491426
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 92822 | ZNF276 | zinc finger protein 276 | XM_005256328.3 | 88.1% | 66% | 1_113del;177T>C;441_442ins32 |
| 2 | human | 92822 | ZNF276 | zinc finger protein 276 | XM_017023890.1 | 88.1% | 66% | 1_113del;177T>C;441_442ins32 |
| 3 | human | 92822 | ZNF276 | zinc finger protein 276 | NM_152287.4 | 69.1% | 69% | 1_498del;562T>C |
| 4 | human | 92822 | ZNF276 | zinc finger protein 276 | NM_001113525.2 | 60.6% | 60.5% | 1_723del;787T>C |
| 5 | human | 92822 | ZNF276 | zinc finger protein 276 | XM_005256324.3 | 59.5% | 47.6% | 1_704del;768T>C;1032_1033ins32 |
| 6 | human | 92822 | ZNF276 | zinc finger protein 276 | XR_243507.2 | 49.7% | 1_801del;865T>C;1921_2248del | |
| 7 | human | 92822 | ZNF276 | zinc finger protein 276 | XR_001752031.1 | 47.9% | (many diffs) | |
| 8 | human | 92822 | ZNF276 | zinc finger protein 276 | XR_429740.2 | 47.5% | (many diffs) | |
| 9 | human | 92822 | ZNF276 | zinc finger protein 276 | XR_001752032.1 | 41.1% | (many diffs) | |
| 10 | human | 92822 | ZNF276 | zinc finger protein 276 | XR_002957853.1 | 40.6% | (many diffs) | |
| 11 | human | 92822 | ZNF276 | zinc finger protein 276 | XR_001752030.1 | 31.7% | (many diffs) | |
| 12 | human | 92822 | ZNF276 | zinc finger protein 276 | XR_933484.2 | 30.9% | (many diffs) | |
| 13 | human | 92822 | ZNF276 | zinc finger protein 276 | NR_110128.1 | 30.7% | (many diffs) | |
| 14 | human | 92822 | ZNF276 | zinc finger protein 276 | XM_017023889.1 | 25.4% | 24.2% | (many diffs) |
| 15 | human | 92822 | ZNF276 | zinc finger protein 276 | NR_110122.2 | 23.8% | (many diffs) | |
| 16 | human | 92822 | ZNF276 | zinc finger protein 276 | NR_110126.2 | 23.6% | (many diffs) | |
| 17 | human | 92822 | ZNF276 | zinc finger protein 276 | NR_110129.2 | 23.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1185
- ORF length:
- 1119
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgga taccagctcc agctgcaagg ccttcttgct ggacagtgcg ctggcagtca 121 agtggccacg ggacaaagag acggcgccac ggctgcccca gcaccgaggg tggaaccctg 181 gggatgcccc tcagacctcc cagggtagag ggacagggac cccagttggg gctgagacca 241 agaccctgcc cagcacggat gtggcccagc ctccttcgga cagcgacgcg gtggggccca 301 ggtcgggctt cccacctcag ccaagcctgc ccctttgcag ggccccaggg cagttgggtg 361 agaagcagct tccatcttca acctcggatg atcgggtaaa agacgagttc agtgaccttt 421 ctgagggaga cgtcttgagt gaagatgaaa atgacaagaa gcaaaatgcc cagtcttcgg 481 acgagtcctt tgagccttac ccagaaagga aagtctctgg taagaagagt gaaagcaaag 541 aagccaagaa gtctgaagaa ccaagaattc ggaagaagcc gggacccaag cccggatgga 601 agaagaagct tcgttgtgag agggaggagc ttcccaccat ctacaagtgt ccttaccagg 661 gctgcacggc cgtgtaccga ggcgctgacg gcatgaagaa gcacatcaag gagcaccacg 721 aggaggtccg ggagcggccc tgcccccacc ctggctgcaa caaggttttc atgatcgacc 781 gctacctgca gcgccacgtg aagctcatcc acacagaggt gcggaactat atctgtgacg 841 aatgtggaca aaccttcaag cagcggaagc accTTCTCGT CCACCAAATG CGACATTCGG 901 GAGCCAAGCC TTTGCAGTGT GAGGTCTGTG GGTTCCAGTG CAGGCAGCGG GCATCCCTCA 961 AGTACCACAT GACCAAACAC AAGGCTGAGA CTGAGCTGGA CTTTGCCTGT GACCAGTGTG 1021 GCCGGCGGTT TGAGAAGGCC CACAACCTCA ATGTACACAT GTCCATGGTG CACCCGCTGA 1081 CACAGACCCA GGACAAGGCC CTGCCCCTGG AGGCGGAACC ACCACCTGGG CCACCGAGCC 1141 CCTCTGTGAC CACAGAGGGC CAGGCGGTGA AGCCCGAACC CACCTGCCCA ACTTTCTTGT 1201 ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT 1261 AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG 1321 GAAAGGACGA GCCGACGTGC CGGACTAACA TATTACGCGT TAAGTCgaca atcaacctct 1381 ggattacaaa atttgtgaaa gatt