Construct: ORF TRCN0000491523
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021831.2_s317c1
- DNA Barcode:
- TCCATTTGCTCACTTCTCCAGGCC
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- POGZ (23126)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000491523
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23126 | POGZ | pogo transposable element d... | NM_207171.2 | 99.9% | 100% | 3945T>G |
| 2 | human | 23126 | POGZ | pogo transposable element d... | XM_005245005.2 | 99.9% | 100% | 3945T>G |
| 3 | human | 23126 | POGZ | pogo transposable element d... | XM_005245006.5 | 99.9% | 100% | 3945T>G |
| 4 | human | 23126 | POGZ | pogo transposable element d... | XM_017000748.1 | 99.9% | 100% | 3945T>G |
| 5 | human | 23126 | POGZ | pogo transposable element d... | XM_017000749.1 | 99.9% | 100% | 3945T>G |
| 6 | human | 23126 | POGZ | pogo transposable element d... | NM_001194938.2 | 99.3% | 99.3% | 698_699ins27;3918T>G |
| 7 | human | 23126 | POGZ | pogo transposable element d... | NM_015100.4 | 96.2% | 96.2% | 124_282del;4104T>G |
| 8 | human | 23126 | POGZ | pogo transposable element d... | XM_005244999.3 | 96.2% | 96.2% | 124_282del;4104T>G |
| 9 | human | 23126 | POGZ | pogo transposable element d... | XM_005245000.4 | 96.2% | 96.2% | 124_282del;4104T>G |
| 10 | human | 23126 | POGZ | pogo transposable element d... | XM_005245001.2 | 96.2% | 96.2% | 124_282del;4104T>G |
| 11 | human | 23126 | POGZ | pogo transposable element d... | XM_017000744.1 | 95.7% | 95.7% | 1_21del;145_303del;4125T>G |
| 12 | human | 23126 | POGZ | pogo transposable element d... | NM_001194937.2 | 95.5% | 95.6% | 124_282del;857_858ins27;4077T>G |
| 13 | human | 23126 | POGZ | pogo transposable element d... | XM_017000745.2 | 95.5% | 95.6% | 124_282del;857_858ins27;4077T>G |
| 14 | human | 23126 | POGZ | pogo transposable element d... | XM_017000746.1 | 95.5% | 95.6% | 124_282del;857_858ins27;4077T>G |
| 15 | human | 23126 | POGZ | pogo transposable element d... | NM_145796.4 | 95.4% | 93.4% | (many diffs) |
| 16 | human | 23126 | POGZ | pogo transposable element d... | XM_024454305.1 | 92.2% | 92.3% | (many diffs) |
| 17 | human | 23126 | POGZ | pogo transposable element d... | XM_024454306.1 | 74.4% | 74.4% | 0_1ins1041;2904T>G |
| 18 | human | 23126 | POGZ | pogo transposable element d... | XR_002959801.1 | 61.4% | (many diffs) | |
| 19 | mouse | 229584 | Pogz | pogo transposable element w... | XM_006501362.1 | 88.9% | 93.3% | (many diffs) |
| 20 | mouse | 229584 | Pogz | pogo transposable element w... | XM_006501363.1 | 88.2% | 92.7% | (many diffs) |
| 21 | mouse | 229584 | Pogz | pogo transposable element w... | NM_172683.3 | 85.6% | 89.8% | (many diffs) |
| 22 | mouse | 229584 | Pogz | pogo transposable element w... | XM_011240090.2 | 85.6% | 89.8% | (many diffs) |
| 23 | mouse | 229584 | Pogz | pogo transposable element w... | NM_001165948.1 | 85% | 89.2% | (many diffs) |
| 24 | mouse | 229584 | Pogz | pogo transposable element w... | XM_006501364.1 | 78.7% | 82.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 4143
- ORF length:
- 4071
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catggcggac accgacctgt tcatggaatg tgaggaggag gagttggagc 121 catggcagaa aatcagtgat gtcattgagg actctgtagt tgaagattat aattcagtgg 181 ataaaactac cacagctggc aatcctttgg tccagcaagg tggacagcca ctcatcctga 241 cccagaatcc agccccaggt ctgggcacaa tggttactca accagtattg aggcctgttc 301 aggtcatgca gaatgccaat catgtgacta gttcccctgt ggcctcacaa ccaatattta 361 tcactacgca gggatttcct gtaaggaatg tccggcctgt acaaaatgca atgaatcagg 421 ttgggattgt gctgaacgta cagcaaggcc aaacggttag accaattaca ctagttccag 481 ccccaggtac ccagtttgtt aagccgacag ttggagttcc acaagtgttc tcccagatga 541 cccctgtgag gccaggctcc acaatgcctg tgaggcccac caccaacacc ttcaccaccg 601 tcatcccggc cactcttacc attcgaagca ccgtcccaca gtcccagtcc cagcagacca 661 agtccactcc cagcacttct accactccca ctgccacaca gccaacctca ctggggcaac 721 tagctgttca gtctccaggc cagtcaaacc agaccacgaa tcccaagcta gctccctcct 781 tcccctctcc acctgcagtg agcattgcca gctttgtcac tgtgaagcga cctggtgtta 841 caggcgaaaa tagcaatgaa gtggccaaat tggtgaatac ccttaacacc atcccttccc 901 tgggccagag tcctgggcca gtggtggtgt ccaacaacag ctctgctcat ggctctcaaa 961 gaaccagcgg acctgagtct tcaatgaaag tgacctcttc catcccagta tttgacctcc 1021 aggatggtgg acggaaaata tgtccacgat gtaatgctca atttcgtgtt actgaagctt 1081 tgagaggtca catgtgttac tgttgcccag aaatggttga ataccagaag aaaggaaagt 1141 ccctggattc agaacccagt gtcccatcag cagcaaagcc cccatcccct gagaaaacag 1201 ctcctgttgc ttccacaccc tcttctacac ctattcctgc tctgtcaccg cctaccaaag 1261 taccagaacc aaatgagaac gtgggcgatg ccgtccagac caaactcatt atgcttgtag 1321 atgacttcta ctatggacgg gatggtggca aagtagccca gctcacaaat ttccctaagg 1381 tcgccacatc tttccgatgc ccacattgta ccaaaaggct aaaaaacaat attcgattca 1441 tgaaccatat gaaacaccac gtagaactcg atcagcagaa cggtgaggta gatggtcaca 1501 ctatctgcca gcactgttac cgccagtttt ccactccctt ccagcttcag tgccacttgg 1561 aaaatgttca tagtccctat gaatctacta ccaagtgcaa gatctgtgaa tgggcgtttg 1621 aaagtgagcc actatttctc cagcatatga aggatactca taagcctgga gagatgcctt 1681 atgtttgcca ggtgtgtcaa tatcgctcct cactctactc tgaggtagat gtccattttc 1741 ggatgatcca tgaggatacc cggcatctgc tctgccctta ttgcctgaag gtcttcaaaa 1801 atggcaatgc attccaacag cattacatga ggcaccagaa gagaaatgtt tatcactgca 1861 acaaatgccg gctgcagttt ctctttgcca aggacaaaat tgaacacaag cttcaacacc 1921 ataaaacctt ccgtaaaccc aagcagctgg agggcttgaa accaggcacc aaggtgacaa 1981 tccgggcttc ccgagggcag ccacgaactg ttcctgtatc ctctaatgat acacctccca 2041 gcgccttgca ggaggcagca ccgctgacct cctcaatgga ccctctgcct gtcttccttt 2101 atccccctgt ccagcgcagc atccagaaga gagctgttag gaaaatgagt gtcatgggcc 2161 ggcagacatg cctggagtgc agcttcgaga tcccagactt ccctaatcat ttccctactt 2221 acgtacactg ctctctgtgt cgctatagca cctgctgttc tcgagcttat gccaaccaca 2281 tgatcaacaa tcatgttcca cggaagagcc ccaagtattt ggctttgttt aaaaattctg 2341 tgagtggaat caagctggcc tgcacttcat gtacctttgt tacctctgtg ggcgatgcta 2401 tggccaagca tttggtattc aacccctctc acagatccag cagcatcctg ccacggggac 2461 tcacttggat agctcactca aggcatggcc agactcgtga ccgagtgcat gaccggaacg 2521 tgaagaatat gtaccctcct ccttccttcc ccactaacaa agctgccact gtgaaatctg 2581 cgggggccac cccagctgag cctgaagagc tactaactcc cttagcccca gcactcccat 2641 caccagcctc aactgcaacc ccaccaccaa cccccactca cccgcaggct ttagcccttc 2701 caccgctggc tacagaggga gccgaatgtc tgaatgttga tgatcaggat gaagggagcc 2761 cagtcaccca agaacctgag ctagcatcag gtggtggtgg tagtggtgga gttggcaaaa 2821 aggagcagct gtctgtgaag aagcttcgag tagtactgtt tgctctatgc tgcaatacag 2881 aacaggcagc tgaacacttc cgaaatcccc agcgacgtat tcgccgttgg cttcgacgtt 2941 tccaggcctc ccagggggag aatctagagg gcaaatatct gagctttgag gcagaagaga 3001 aactggctga gtgggtgcta acccagcgcg aacaacagct acctgtaaat gaggagacct 3061 tgttccagaa ggccaccaaa ataggacgtt ctttggaagg ggggtttaag atctcctatg 3121 agtgggctgt gcgtttcatg ctgcggcacc acctgactcc ccatgcccgg cgagctgtgg 3181 cccacaccct acctaaggat gtagcagaga atgcaggact cttcattgat tttgtacaac 3241 ggcagattca caaccaggac ttacccttgt ctatgattgt ggctattgat gagatctctt 3301 tgttcctgga tacagaggtg ctgagcagtg atgatcgaaa ggagaatgcc ctgcagacag 3361 tgggcacagg ggaaccttgg tgtgatgtag tcctagccat tctggcagat ggcactgtcc 3421 ttcccaccct ggttttctac agagggcaga tggatcagcc tgctaacatg ccagactcca 3481 tattgctaga ggcaaaggag agtggctaca gtgatgacga gatcatggag ctgtggtcaa 3541 ctcgagtgtg gcagaagcac acagcttgcc agcgcagcaa aggcatgctt gtgatggact 3601 gtcatcgcac tcacttgtca gaagaggtac tggctatgct tagtgcctct agcactttgc 3661 ctgcagtggt cccagcaggc tgtagctcca aaattcagcc attagatgta tgcatcaaaa 3721 gaactgtcaa gaacttcctg cataaaaaat ggaaggaaca ggctcgggaa atggcagata 3781 ctgcatgtga ttctgatgtc ctgcttcagc tggtgcttgt ctggctgggt gaagtgcTAG 3841 GTGTCATTGG GGACTGTCCA GAGCTAGTTC AGCGCTCCTT CCTGGTGGCT AGTGTTCTGC 3901 CTGGCCCCGA TGGCAACATT AACTCACCTA CAAGAAATGC TGACATGCAG GAGGAGCTAA 3961 TTGCCTCCCT AGAGGAGCAA CTGAAGCTGA GTGGGGAACA TTCTGAGTCT TCCACGCCAC 4021 GACCCAGATC ATCTCCTGAA GAGACAATTG AGCCTGAAAG TCTTCACCAG CTCTTTGAGG 4081 GTGAAAGTGA GACCGAGTCT TTCTATGGCT TTGAAGAAGC TGACCTAGAT CTGATGGAGA 4141 TTTAGAACCC AGCTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC 4201 TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT 4261 CTTGGCTTTA TATATCTTGT GGAAAGGACG ATCCATTTGC TCACTTCTCC AGGCCACGCG 4321 TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt