Construct: ORF TRCN0000491523

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021831.2_s317c1
DNA Barcode:
TCCATTTGCTCACTTCTCCAGGCC
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
POGZ (23126)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000491523
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23126 POGZ pogo transposable element d... NM_207171.2 99.9% 100% 3945T>G
2 human 23126 POGZ pogo transposable element d... XM_005245005.2 99.9% 100% 3945T>G
3 human 23126 POGZ pogo transposable element d... XM_005245006.5 99.9% 100% 3945T>G
4 human 23126 POGZ pogo transposable element d... XM_017000748.1 99.9% 100% 3945T>G
5 human 23126 POGZ pogo transposable element d... XM_017000749.1 99.9% 100% 3945T>G
6 human 23126 POGZ pogo transposable element d... NM_001194938.2 99.3% 99.3% 698_699ins27;3918T>G
7 human 23126 POGZ pogo transposable element d... NM_015100.4 96.2% 96.2% 124_282del;4104T>G
8 human 23126 POGZ pogo transposable element d... XM_005244999.3 96.2% 96.2% 124_282del;4104T>G
9 human 23126 POGZ pogo transposable element d... XM_005245000.4 96.2% 96.2% 124_282del;4104T>G
10 human 23126 POGZ pogo transposable element d... XM_005245001.2 96.2% 96.2% 124_282del;4104T>G
11 human 23126 POGZ pogo transposable element d... XM_017000744.1 95.7% 95.7% 1_21del;145_303del;4125T>G
12 human 23126 POGZ pogo transposable element d... NM_001194937.2 95.5% 95.6% 124_282del;857_858ins27;4077T>G
13 human 23126 POGZ pogo transposable element d... XM_017000745.2 95.5% 95.6% 124_282del;857_858ins27;4077T>G
14 human 23126 POGZ pogo transposable element d... XM_017000746.1 95.5% 95.6% 124_282del;857_858ins27;4077T>G
15 human 23126 POGZ pogo transposable element d... NM_145796.4 95.4% 93.4% (many diffs)
16 human 23126 POGZ pogo transposable element d... XM_024454305.1 92.2% 92.3% (many diffs)
17 human 23126 POGZ pogo transposable element d... XM_024454306.1 74.4% 74.4% 0_1ins1041;2904T>G
18 human 23126 POGZ pogo transposable element d... XR_002959801.1 61.4% (many diffs)
19 mouse 229584 Pogz pogo transposable element w... XM_006501362.1 88.9% 93.3% (many diffs)
20 mouse 229584 Pogz pogo transposable element w... XM_006501363.1 88.2% 92.7% (many diffs)
21 mouse 229584 Pogz pogo transposable element w... NM_172683.3 85.6% 89.8% (many diffs)
22 mouse 229584 Pogz pogo transposable element w... XM_011240090.2 85.6% 89.8% (many diffs)
23 mouse 229584 Pogz pogo transposable element w... NM_001165948.1 85% 89.2% (many diffs)
24 mouse 229584 Pogz pogo transposable element w... XM_006501364.1 78.7% 82.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
72
ORF end:
4143
ORF length:
4071
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcac catggcggac accgacctgt tcatggaatg tgaggaggag gagttggagc
121catggcagaa aatcagtgat gtcattgagg actctgtagt tgaagattat aattcagtgg
181ataaaactac cacagctggc aatcctttgg tccagcaagg tggacagcca ctcatcctga
241cccagaatcc agccccaggt ctgggcacaa tggttactca accagtattg aggcctgttc
301aggtcatgca gaatgccaat catgtgacta gttcccctgt ggcctcacaa ccaatattta
361tcactacgca gggatttcct gtaaggaatg tccggcctgt acaaaatgca atgaatcagg
421ttgggattgt gctgaacgta cagcaaggcc aaacggttag accaattaca ctagttccag
481ccccaggtac ccagtttgtt aagccgacag ttggagttcc acaagtgttc tcccagatga
541cccctgtgag gccaggctcc acaatgcctg tgaggcccac caccaacacc ttcaccaccg
601tcatcccggc cactcttacc attcgaagca ccgtcccaca gtcccagtcc cagcagacca
661agtccactcc cagcacttct accactccca ctgccacaca gccaacctca ctggggcaac
721tagctgttca gtctccaggc cagtcaaacc agaccacgaa tcccaagcta gctccctcct
781tcccctctcc acctgcagtg agcattgcca gctttgtcac tgtgaagcga cctggtgtta
841caggcgaaaa tagcaatgaa gtggccaaat tggtgaatac ccttaacacc atcccttccc
901tgggccagag tcctgggcca gtggtggtgt ccaacaacag ctctgctcat ggctctcaaa
961gaaccagcgg acctgagtct tcaatgaaag tgacctcttc catcccagta tttgacctcc
1021aggatggtgg acggaaaata tgtccacgat gtaatgctca atttcgtgtt actgaagctt
1081tgagaggtca catgtgttac tgttgcccag aaatggttga ataccagaag aaaggaaagt
1141ccctggattc agaacccagt gtcccatcag cagcaaagcc cccatcccct gagaaaacag
1201ctcctgttgc ttccacaccc tcttctacac ctattcctgc tctgtcaccg cctaccaaag
1261taccagaacc aaatgagaac gtgggcgatg ccgtccagac caaactcatt atgcttgtag
1321atgacttcta ctatggacgg gatggtggca aagtagccca gctcacaaat ttccctaagg
1381tcgccacatc tttccgatgc ccacattgta ccaaaaggct aaaaaacaat attcgattca
1441tgaaccatat gaaacaccac gtagaactcg atcagcagaa cggtgaggta gatggtcaca
1501ctatctgcca gcactgttac cgccagtttt ccactccctt ccagcttcag tgccacttgg
1561aaaatgttca tagtccctat gaatctacta ccaagtgcaa gatctgtgaa tgggcgtttg
1621aaagtgagcc actatttctc cagcatatga aggatactca taagcctgga gagatgcctt
1681atgtttgcca ggtgtgtcaa tatcgctcct cactctactc tgaggtagat gtccattttc
1741ggatgatcca tgaggatacc cggcatctgc tctgccctta ttgcctgaag gtcttcaaaa
1801atggcaatgc attccaacag cattacatga ggcaccagaa gagaaatgtt tatcactgca
1861acaaatgccg gctgcagttt ctctttgcca aggacaaaat tgaacacaag cttcaacacc
1921ataaaacctt ccgtaaaccc aagcagctgg agggcttgaa accaggcacc aaggtgacaa
1981tccgggcttc ccgagggcag ccacgaactg ttcctgtatc ctctaatgat acacctccca
2041gcgccttgca ggaggcagca ccgctgacct cctcaatgga ccctctgcct gtcttccttt
2101atccccctgt ccagcgcagc atccagaaga gagctgttag gaaaatgagt gtcatgggcc
2161ggcagacatg cctggagtgc agcttcgaga tcccagactt ccctaatcat ttccctactt
2221acgtacactg ctctctgtgt cgctatagca cctgctgttc tcgagcttat gccaaccaca
2281tgatcaacaa tcatgttcca cggaagagcc ccaagtattt ggctttgttt aaaaattctg
2341tgagtggaat caagctggcc tgcacttcat gtacctttgt tacctctgtg ggcgatgcta
2401tggccaagca tttggtattc aacccctctc acagatccag cagcatcctg ccacggggac
2461tcacttggat agctcactca aggcatggcc agactcgtga ccgagtgcat gaccggaacg
2521tgaagaatat gtaccctcct ccttccttcc ccactaacaa agctgccact gtgaaatctg
2581cgggggccac cccagctgag cctgaagagc tactaactcc cttagcccca gcactcccat
2641caccagcctc aactgcaacc ccaccaccaa cccccactca cccgcaggct ttagcccttc
2701caccgctggc tacagaggga gccgaatgtc tgaatgttga tgatcaggat gaagggagcc
2761cagtcaccca agaacctgag ctagcatcag gtggtggtgg tagtggtgga gttggcaaaa
2821aggagcagct gtctgtgaag aagcttcgag tagtactgtt tgctctatgc tgcaatacag
2881aacaggcagc tgaacacttc cgaaatcccc agcgacgtat tcgccgttgg cttcgacgtt
2941tccaggcctc ccagggggag aatctagagg gcaaatatct gagctttgag gcagaagaga
3001aactggctga gtgggtgcta acccagcgcg aacaacagct acctgtaaat gaggagacct
3061tgttccagaa ggccaccaaa ataggacgtt ctttggaagg ggggtttaag atctcctatg
3121agtgggctgt gcgtttcatg ctgcggcacc acctgactcc ccatgcccgg cgagctgtgg
3181cccacaccct acctaaggat gtagcagaga atgcaggact cttcattgat tttgtacaac
3241ggcagattca caaccaggac ttacccttgt ctatgattgt ggctattgat gagatctctt
3301tgttcctgga tacagaggtg ctgagcagtg atgatcgaaa ggagaatgcc ctgcagacag
3361tgggcacagg ggaaccttgg tgtgatgtag tcctagccat tctggcagat ggcactgtcc
3421ttcccaccct ggttttctac agagggcaga tggatcagcc tgctaacatg ccagactcca
3481tattgctaga ggcaaaggag agtggctaca gtgatgacga gatcatggag ctgtggtcaa
3541ctcgagtgtg gcagaagcac acagcttgcc agcgcagcaa aggcatgctt gtgatggact
3601gtcatcgcac tcacttgtca gaagaggtac tggctatgct tagtgcctct agcactttgc
3661ctgcagtggt cccagcaggc tgtagctcca aaattcagcc attagatgta tgcatcaaaa
3721gaactgtcaa gaacttcctg cataaaaaat ggaaggaaca ggctcgggaa atggcagata
3781ctgcatgtga ttctgatgtc ctgcttcagc tggtgcttgt ctggctgggt gaagtgcTAG
3841GTGTCATTGG GGACTGTCCA GAGCTAGTTC AGCGCTCCTT CCTGGTGGCT AGTGTTCTGC
3901CTGGCCCCGA TGGCAACATT AACTCACCTA CAAGAAATGC TGACATGCAG GAGGAGCTAA
3961TTGCCTCCCT AGAGGAGCAA CTGAAGCTGA GTGGGGAACA TTCTGAGTCT TCCACGCCAC
4021GACCCAGATC ATCTCCTGAA GAGACAATTG AGCCTGAAAG TCTTCACCAG CTCTTTGAGG
4081GTGAAAGTGA GACCGAGTCT TTCTATGGCT TTGAAGAAGC TGACCTAGAT CTGATGGAGA
4141TTTAGAACCC AGCTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC
4201TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT
4261CTTGGCTTTA TATATCTTGT GGAAAGGACG ATCCATTTGC TCACTTCTCC AGGCCACGCG
4321TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)

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