Construct: ORF TRCN0000491630

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012233.1_s317c1
Derived from:
ccsbBroadEn_02621
DNA Barcode:
GCTATCAAATGTTTGTGAAGCGCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PRDM7 (11105)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000491630
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11105 PRDM7 PR/SET domain 7 XM_017022884.1 54.6% 38.8% 1_81del;411_693del;878_939del
2 human 11105 PRDM7 PR/SET domain 7 XM_011522829.1 45.3% 45.3% 1_618del
3 human 11105 PRDM7 PR/SET domain 7 XM_017022882.1 40.8% 29.2% 1_399del;729_1011del;1196_1257del
4 human 11105 PRDM7 PR/SET domain 7 XM_017022883.1 40.8% 29.2% 1_399del;729_1011del;1196_1257del
5 human 11105 PRDM7 PR/SET domain 7 NM_001098173.1 34.7% 24.9% 1_618del;948_1230del;1415_1476del
6 human 11105 PRDM7 PR/SET domain 7 XM_005256274.3 34.7% 24.9% 1_618del;948_1230del;1415_1476del
7 human 56979 PRDM9 PR/SET domain 9 NM_001310214.1 18.5% 13.8% (many diffs)
8 human 56979 PRDM9 PR/SET domain 9 NM_020227.3 18.5% 13.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
582
ORF length:
513
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gtgtcagaac ttcttcattg acagctgtgc tgctcatggg ccccctacat
121ttgtaaagga cagtgcagtg gacaaggggc atcccaaccg ttcagccctc agtctgcccc
181cggggctgag aattgggcca tcaggcatcc ctcaggctgg gcttggagta tggaacgagg
241catcTGATCT GCCACTGGGT CTGCACTTTG GCCCCTATGA GGGCCGAATT ACAGAAGACG
301AAGAGGCAGC CAACAGTGGA TATTCCTGGC TAATCACCAA GGGGAGAAAC TGCTATGAGT
361ATGTGGATGG AAAAGATAAA TCCTCGGCCA ACTGGATGAG AACCAAAGCC AGAGATCCAT
421CCATGTCCCT CATGCTGTCT GGCCTTTTCA AGTCAAAAAT TTCTCAGTCA ACATGTGGAA
481CGCAATCACT CCTCTCAGAA CTTCCCAGGA CCATCTGCAA GAAAACTTCT CCAACCAGAG
541AATCCCTGCC CAGGGGATCA GAATCAGGAG CGGCAATATT CTTGCCAACT TTCTTGTACA
601AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT
661AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA
721AGGACGAGCT ATCAAATGTT TGTGAAGCGC CACGCGTTAA GTCgacaatc aacctctgga
781ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)