Construct: ORF TRCN0000492079

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001140.1_s317c1
Derived from:
ccsbBroadEn_16021
DNA Barcode:
ACAACGCACGCCTTATCGCACCTA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZMIZ2 (83637)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000492079
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83637 ZMIZ2 zinc finger MIZ-type contai... XM_011515566.1 67.4% 67.4% 1_639del
2 human 83637 ZMIZ2 zinc finger MIZ-type contai... NM_001300959.1 51.2% 51.2% 1_1260del
3 human 83637 ZMIZ2 zinc finger MIZ-type contai... XM_005249873.2 49.7% 49.7% 1_1338del
4 human 83637 ZMIZ2 zinc finger MIZ-type contai... NM_174929.2 49.4% 49.4% 1_1356del
5 human 83637 ZMIZ2 zinc finger MIZ-type contai... XM_005249872.2 49.4% 49.4% 1_1356del
6 human 83637 ZMIZ2 zinc finger MIZ-type contai... XM_005249871.2 49.2% 49.2% 1_1365del
7 human 83637 ZMIZ2 zinc finger MIZ-type contai... XM_005249870.2 48.9% 48.9% 1_1383del
8 human 83637 ZMIZ2 zinc finger MIZ-type contai... NM_031449.4 48% 48% 1_1434del
9 human 83637 ZMIZ2 zinc finger MIZ-type contai... XM_005249869.2 48% 48% 1_1434del
10 human 83637 ZMIZ2 zinc finger MIZ-type contai... XM_005249866.2 47.5% 47.5% 1_1461del
11 human 83637 ZMIZ2 zinc finger MIZ-type contai... XM_005249867.5 47.5% 47.5% 1_1461del
12 human 83637 ZMIZ2 zinc finger MIZ-type contai... XM_005249868.4 47.5% 47.5% 1_1461del
13 human 83637 ZMIZ2 zinc finger MIZ-type contai... XM_017012674.1 47.5% 47.5% 1_1461del
14 human 83637 ZMIZ2 zinc finger MIZ-type contai... XR_926950.1 43.3% 1_1608del;2415_2504del;3010_3011insTGTTTGAGAACAAC
15 mouse 52915 Zmiz2 zinc finger, MIZ-type conta... XM_017314664.1 45.9% 47.3% (many diffs)
16 mouse 52915 Zmiz2 zinc finger, MIZ-type conta... XM_011243735.2 45.5% 46.8% (many diffs)
17 mouse 52915 Zmiz2 zinc finger, MIZ-type conta... XM_011243734.2 44.2% 45.5% (many diffs)
18 mouse 52915 Zmiz2 zinc finger, MIZ-type conta... NM_001005867.1 44.1% 45.4% (many diffs)
19 mouse 52915 Zmiz2 zinc finger, MIZ-type conta... XM_011243733.2 43.8% 45.1% (many diffs)
20 mouse 52915 Zmiz2 zinc finger, MIZ-type conta... NM_028601.3 42.6% 43.9% (many diffs)
21 mouse 52915 Zmiz2 zinc finger, MIZ-type conta... XM_006514748.2 42.6% 43.9% (many diffs)
22 mouse 52915 Zmiz2 zinc finger, MIZ-type conta... XM_006514750.3 42.6% 43.9% (many diffs)
23 mouse 52915 Zmiz2 zinc finger, MIZ-type conta... XM_011243732.1 42.6% 43.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1392
ORF length:
1326
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa caccaactgg ccagcctcgg tgcaggtcag cgtcaatgcc acgccgctca
121ccatcgagcg tggcgacaac aagacctcgc acaagccact ctacctgaag catgtgtgcc
181agccaggccg caacaccatc cagatcaccg tcaccgcctg ctgctgctcc cacctcttcg
241tgctgcagct agtgcaccgc ccatccgtcc gctcggtgct gcagggcctc ctcaaaaagc
301gcctcctgcc tgctgagcac tgcatcacca agataaagcg gaacttcagc agcggcacca
361tccctggcac ccctgggccc aacggagagg acggggtgga gcagacagct atcaaggtgt
421ccctgaagtg ccccatcacc ttccgcagga tccagctccc tgcccgaggt catgactgtc
481gccacataca gtgctttgac ctggagtcgt acctgcagct caactgtgag cgggggactt
541ggaggtgtcc tgtgtgcaac aagacagctt tgctggaggg cctggaggtg gaccagtaca
601tgctgggcat cctgatttac attcagaact ctgactatga ggagatcacc atcgacccca
661cgtgcagctg gaagccagtg cccgtgaagc ctgacatgca catcaaggag gagccggatg
721ggccagcact gaagcgctgc cgcaccgtga gccccgccca cgtgctcatg cccagcgtga
781tggagatgat cgccgccctg ggccccggcg ctgccccctt tgcccccctg cagcccccct
841cagtccctgc ccccagcgac taccctggcc agggttccag cttcctgggg cctggaactt
901tccctgagtc cttcccaccc accacgccca gcaccccaac ccttgctgag ttcaccccgg
961gaccaccccc catctcctac cagtctgaca ttcccagcag cctcctgact tcagagaagt
1021ctaccgcctg cctcccaagc cagatggcac cagcaggtca cctggacccc actcacaatc
1081cTGGGACACC AGGACTACAC ACCTCCAACC TTGGGGCCCC TCCAGGTCCC CAGCTGCACC
1141ATTCAAACCC TCCCCCAGCG TCCCGGCAGT CCTTGGGCCA AGCGAGCTTA GGACCTACGG
1201GTGAACTGGC CTTCAGTCCT GCCACAGGCG TGATGGGGCC CCCCAGCATG TCTGGAGCCG
1261GGGAGGCCCC AGAACCAGCT CTGGACCTGC TCCCGGAACT GACCAACCCT GATGAGCTAC
1321TGTCCTACTT GGGCCCACCC GACCTCCCTA CGAACAACAA TGACGACCTG CTTTCTCTGT
1381TTGAGAACAA CTGCCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
1441ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT
1501CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGAACA ACGCACGCCT TATCGCACCT
1561AACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)