Construct: ORF TRCN0000492116

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019136.2_s317c1
DNA Barcode:
ATGACATGCCTCATGTTCAACCCG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NEK11 (79858)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000492116
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79858 NEK11 NIMA related kinase 11 NM_001321220.2 99.8% 99.6% 1463A>T;1935_1936insG
2 human 79858 NEK11 NIMA related kinase 11 NM_001353023.2 99.8% 99.6% 1463A>T;1935_1936insG
3 human 79858 NEK11 NIMA related kinase 11 NM_024800.5 99.8% 99.6% 1463A>T;1935_1936insG
4 human 79858 NEK11 NIMA related kinase 11 NM_001353024.2 99.7% 99.5% 519_520insGGA;1460A>T;1932_1933insG
5 human 79858 NEK11 NIMA related kinase 11 NM_001353025.2 99.7% 99.5% 519_520insGGA;1460A>T;1932_1933insG
6 human 79858 NEK11 NIMA related kinase 11 NM_001353027.2 94.3% 94.1% 1176_1177ins108;1355A>T;1827_1828insG
7 human 79858 NEK11 NIMA related kinase 11 NM_001321221.2 93.7% 93.6% 335_460del;1589A>T;2061_2062insG
8 human 79858 NEK11 NIMA related kinase 11 NM_001353022.2 93.7% 93.6% 335_460del;1589A>T;2061_2062insG
9 human 79858 NEK11 NIMA related kinase 11 XM_017007206.1 93.7% 93.6% 335_460del;1589A>T;2061_2062insG
10 human 79858 NEK11 NIMA related kinase 11 XM_017007207.1 93.7% 93.6% 335_460del;1589A>T;2061_2062insG
11 human 79858 NEK11 NIMA related kinase 11 XM_017007208.1 93.7% 93.6% 335_460del;1589A>T;2061_2062insG
12 human 79858 NEK11 NIMA related kinase 11 XM_017007209.1 93.7% 93.6% 335_460del;1589A>T;2061_2062insG
13 human 79858 NEK11 NIMA related kinase 11 XM_017007210.1 93.7% 93.6% 335_460del;1589A>T;2061_2062insG
14 human 79858 NEK11 NIMA related kinase 11 NM_001146003.2 92.7% 81% 1463A>T;1621_1622ins97;1797_1798ins42
15 human 79858 NEK11 NIMA related kinase 11 NM_001353028.2 92.7% 81% 1463A>T;1621_1622ins97;1797_1798ins42
16 human 79858 NEK11 NIMA related kinase 11 NM_001353029.2 92.7% 81% 1463A>T;1621_1622ins97;1797_1798ins42
17 human 79858 NEK11 NIMA related kinase 11 NM_001353030.2 87.1% 75.7% (many diffs)
18 human 79858 NEK11 NIMA related kinase 11 NM_001353031.2 87.1% 75.7% (many diffs)
19 human 79858 NEK11 NIMA related kinase 11 NM_001353026.2 87% 76.2% (many diffs)
20 human 79858 NEK11 NIMA related kinase 11 XM_024453755.1 87% 76.2% (many diffs)
21 human 79858 NEK11 NIMA related kinase 11 NM_001321222.2 83.6% 83.4% 647_648ins315;1148A>T;1620_1621insG
22 human 79858 NEK11 NIMA related kinase 11 NM_001353032.2 83.6% 83.4% 647_648ins315;1148A>T;1620_1621insG
23 human 79858 NEK11 NIMA related kinase 11 XM_024453756.1 83.6% 83.4% 647_648ins315;1148A>T;1620_1621insG
24 human 79858 NEK11 NIMA related kinase 11 NM_001353033.2 82.8% 82.3% (many diffs)
25 human 79858 NEK11 NIMA related kinase 11 NM_001353034.2 82.8% 82.3% (many diffs)
26 human 79858 NEK11 NIMA related kinase 11 XM_017007219.1 82.8% 82.3% (many diffs)
27 human 79858 NEK11 NIMA related kinase 11 NM_001353036.2 82.8% 71.5% (many diffs)
28 human 79858 NEK11 NIMA related kinase 11 NM_001353037.2 78% 77.8% (many diffs)
29 human 79858 NEK11 NIMA related kinase 11 XM_024453757.1 78% 77.8% (many diffs)
30 human 79858 NEK11 NIMA related kinase 11 NM_001353038.2 76.9% 76.7% 0_1ins444;1019A>T;1491_1492insG
31 human 79858 NEK11 NIMA related kinase 11 NM_001353039.2 76.9% 76.7% 0_1ins444;1019A>T;1491_1492insG
32 human 79858 NEK11 NIMA related kinase 11 NM_001353040.2 76.9% 76.7% 0_1ins444;1019A>T;1491_1492insG
33 human 79858 NEK11 NIMA related kinase 11 NM_001353041.2 76.9% 76.7% 0_1ins444;1019A>T;1491_1492insG
34 human 79858 NEK11 NIMA related kinase 11 NM_001353042.2 76.9% 76.7% 0_1ins444;1019A>T;1491_1492insG
35 human 79858 NEK11 NIMA related kinase 11 NM_001353043.2 76.9% 76.7% 0_1ins444;1019A>T;1491_1492insG
36 human 79858 NEK11 NIMA related kinase 11 XM_011513173.1 76.9% 76.7% 0_1ins444;1019A>T;1491_1492insG
37 human 79858 NEK11 NIMA related kinase 11 XM_011513174.1 76.9% 76.7% 0_1ins444;1019A>T;1491_1492insG
38 human 79858 NEK11 NIMA related kinase 11 XM_011513175.1 76.9% 76.7% 0_1ins444;1019A>T;1491_1492insG
39 human 79858 NEK11 NIMA related kinase 11 XM_017007228.1 76.9% 76.7% 0_1ins444;1019A>T;1491_1492insG
40 human 79858 NEK11 NIMA related kinase 11 XM_024453758.1 76.9% 76.7% 0_1ins444;1019A>T;1491_1492insG
41 human 79858 NEK11 NIMA related kinase 11 XM_024453759.1 76.9% 76.7% 0_1ins444;1019A>T;1491_1492insG
42 human 79858 NEK11 NIMA related kinase 11 NM_001353044.2 76.4% 65.4% (many diffs)
43 human 79858 NEK11 NIMA related kinase 11 NM_001353045.2 76.4% 65.4% (many diffs)
44 human 79858 NEK11 NIMA related kinase 11 XR_001740271.1 76.3% (many diffs)
45 human 79858 NEK11 NIMA related kinase 11 NM_001321223.1 73.8% 72.4% (many diffs)
46 human 79858 NEK11 NIMA related kinase 11 NM_145910.4 72.5% 72.1% (many diffs)
47 human 79858 NEK11 NIMA related kinase 11 XM_024453760.1 71.6% 71.5% 0_1ins546;917A>T;1389_1390insG
48 human 79858 NEK11 NIMA related kinase 11 NM_001321224.2 71.3% 71.2% (many diffs)
49 human 79858 NEK11 NIMA related kinase 11 NM_001353046.2 71.3% 71.2% (many diffs)
50 human 79858 NEK11 NIMA related kinase 11 NM_001353048.2 69.8% 59.1% (many diffs)
51 human 79858 NEK11 NIMA related kinase 11 XM_017007233.2 69.8% 59.1% (many diffs)
52 human 79858 NEK11 NIMA related kinase 11 XM_017007221.1 69.3% 68% (many diffs)
53 human 79858 NEK11 NIMA related kinase 11 XM_017007220.1 69.3% 68% (many diffs)
54 human 79858 NEK11 NIMA related kinase 11 XM_017007222.1 68.1% 67.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
72
ORF end:
2010
ORF length:
1938
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcac catgctgaaa ttccaagagg cagctaagtg tgtgagtgga tcaacagcca
121tttccactta tccaaagacc ttgattgcaa gaagatacgt gcttcaacaa aaacttggca
181gtggaagttt tggaactgtc tatctggttt cagacaagaa agccaaacga ggagaggaat
241taaaggtact taaggaaata tctgttggag aactaaatcc aaatgaaact gtacaggcca
301atttggaagc ccaactcctc tccaagctgg accacccagc cattgtcaag ttccatgcaa
361gttttgtgga gcaagataat ttctgcatta tcacggagta ctgtgagggc cgagatctgg
421acgataaaat tcaggaatat aaacaagctg gaaaaatctt tccagaaaat caaataatag
481aatggtttat ccagctgctg ctgggagttg actacatgca tgagaggagg atacttcatc
541gagacttaaa gtcaaagaat gtatttctga aaaataatct ccttaaaatt ggagattttg
601gagtttctcg acttctaatg ggatcctgtg acctggccac aactttaact ggaactcccc
661attatatgag tcctgaggct ctgaaacacc aaggctatga cacaaagtcg gacatctggt
721cactggcatg cattttgtat gagatgtgct gcatgaatca tgcattcgct ggctccaatt
781tcttatccat tgttttaaaa attgttgaag gtgacacacc ttctctccct gagagatatc
841caaaagaact aaatgccatc atggaaagca tgttgaacaa gaatccttca ttaagaccat
901ctgctatcga aattttaaaa atcccttacc ttgatgagca gctacagaac ctaatgtgta
961gatattcaga aatgactctg gaagacaaaa atttggattg tcagaaggag gctgctcata
1021taattaatgc catgcaaaaa aggatccacc tgcagactct gagggcactg tcagaagtac
1081agaaaatgac gccaagagaa aggatgcggc tgaggaagct ccaggcggct gatgagaaag
1141ccaggaagct gaaaaagatt gtggaagaaa aatatgaaga aaatagcaaa cgaatgcaag
1201aattgagatc tcggaacttt cagcagctga gtgttgatgt actccatgaa aaaacacatt
1261taaaaggaat ggaagaaaag gaggagcaac ctgagggaag actttcttgt tcaccccagg
1321acgaggatga agagaggtgg caaggcaggg aagaggaatc tgatgaacca actttagaga
1381acctgcctga gtctcagcct attccttcca tggacctcca cgaacttgaa tcaattgtag
1441aggatgccac atctgacctt ggataccatg agatcccaga agacccactt gtggctgaag
1501agtactacgc tgatgcattt gattcctatt gtgtagagag tgatgaggag gaagaagaaa
1561tagcgttaga aagaccagag aaagaaatca ggaatgaggg aTCCCAGCCT GCTTACAGAA
1621CAAACCAACA GGACAGTGAT ATCGAAGCGT TGGCCAGGTG TTTGGAAAAT GTCCTGGGTT
1681GCACTTCTCT AGACACAAAG ACCATCACCA CCATGGCTGA AGACATGTCC CCAGGACCAC
1741CAATTTTCAA CAGTGTGATG GCCAGGACCA AGATGAAACG CATGAGGGAA TCAGCCATGC
1801AGAAGCTGGG GACAGAAGTA TTTGAAGAGG TCTATAATTA CCTCAAGAGA GCAAGGCATC
1861AGAATGCTAG CGAAGCAGAG ATCCGCGAGT GTTTGGAAAA AGTGGTGCCT CAAGCCAGCG
1921ACTGTTTTGA AGTGGACCAG CTCCTGTACT TTGAAGAGCA GTTGCTGATC ACGATGGGAA
1981AAGAACCTAC TCTCCAGAAC CATCTCGACC CAGCTTTCTT GTACAAAGTG GTTGATATCG
2041GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
2101AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GAATGACATG
2161CCTCATGTTC AACCCGACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga
2221aagatt

Download FASTA (ORF) (Full)

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