Construct: ORF TRCN0000492316

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000373.2_s317c1
Derived from:
ccsbBroadEn_11116
DNA Barcode:
CCACTCTCCTATCCTCATCATTTA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ACSM3 (6296)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000492316
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6296 ACSM3 acyl-CoA synthetase medium ... NM_202000.2 98.1% 98.1% 1_24del
2 human 6296 ACSM3 acyl-CoA synthetase medium ... XM_024450371.1 73.6% 68.7% (many diffs)
3 human 6296 ACSM3 acyl-CoA synthetase medium ... NM_005622.4 72.2% 67.4% (many diffs)
4 human 6296 ACSM3 acyl-CoA synthetase medium ... XM_024450370.1 72.2% 67.4% (many diffs)
5 human 6296 ACSM3 acyl-CoA synthetase medium ... XM_017023523.2 71% 66.3% (many diffs)
6 human 6296 ACSM3 acyl-CoA synthetase medium ... XM_024450369.1 71% 66.3% (many diffs)
7 human 6296 ACSM3 acyl-CoA synthetase medium ... XM_011545911.2 68% 63.5% (many diffs)
8 human 6296 ACSM3 acyl-CoA synthetase medium ... XM_024450368.1 68% 63.5% (many diffs)
9 human 6296 ACSM3 acyl-CoA synthetase medium ... XM_024450367.1 66.9% 62.5% (many diffs)
10 human 6296 ACSM3 acyl-CoA synthetase medium ... XR_002957833.1 36.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1356
ORF length:
1290
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61tgggcatgct acgtcatgcc aagtgttttc agcgcctagc aatttttggt tctgtgaggg
121cactgcataa agataataga acagcaaccc ctcagaattt ctccaactat gaatccatga
181aacaggactt caaactgggg attccagagt atttcaactt tgctaaagat gtcctggacc
241aatggactga taaggaaaag gctggaaaga aaccttcaaa tccagccttc tggtggatca
301acagaaatgg agaagagatg cgatggagtt ttgaggaact gggatctctg tccagaaaat
361ttgccaatat actttcagaa gcctgttccc tacaaagagg agatcgggta attctgattc
421tgcccagggt cccagagtgg tggcttgcaa atgtggcctg tctgcgaaca gggacagttt
481taattccagg aaccactcag ctgacccaga aagacattct ctacagacta caatcttcaa
541aagcaaactg cattatcacc aatgatgttt tagccccagc agtagacgct gttgcatcca
601aatgtgaaaa tctgcactcc aagctgattg tatcagagaa ctccagagag gggtggggga
661acctcaagga gttgatgaaa catgccagtg acagccacac ctgtgtgaag acaaaacaca
721atgagatcat ggccatattc tttaccagtg gaacaagtgg atatccgaaa atgactgcac
781acacccacag cagttttggt ttaggattat ctgtaaatgg aaggttctgg ctagatttga
841caccctcaga tgtgatgtgg aatacctcag atacgggctg ggcaaagtct gcatggagta
901gtgttttttc tccgtggatc cagggagcat gtgtattcac acaccattta ccccgttttg
961agccgacttc tatcttgcaa acactctcca agtaccccat cacagtcttc tgttcagcac
1021caactgtata ccgaatgctt gtacagaatg atataaCCAG CTATAAGTTT AAAAGCTTAA
1081AGCACTGTGT GAGTGCTGGG GAACCAATTA CCCCTGACGT GACTGAAAAA TGGAGAAACA
1141AGACGGGCCT GGATATCTAC GAAGGATATG GACAGACTGA AACGGTGCTA ATCTGTGGAA
1201ATTTTAAGGG AATGAAAATT AAACCTGGCT CAATGGGAAA ACCTTCTCCT GCTTTCGATG
1261TTAAGGTTTG CACATCCCCT TCCAGGAGAA TGTTTAACAA CCCAATCTGT ACACTACCTA
1321CCTACCGCTT ACCCCCATAT AAACTTTCTT TGTTATGCCC AACTTTCTTG TACAAAGTGG
1381TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
1441CTAGCCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
1501ACCACTCTCC TATCCTCATC ATTTAACGCG TTAAGTCgac aatcaacctc tggattacaa
1561aatttgtgaa agatt

Download FASTA (ORF) (Full)