Construct: ORF ccsbBroad304_00235

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016894.1_s304c1, BRDN0000462065
Derived from:
ccsbBroadEn_00235
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KRIT1 (889)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_00235
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350672.1 100% 100%
2 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350673.1 100% 100%
3 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350674.1 100% 100%
4 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350675.1 100% 100%
5 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350676.1 100% 100%
6 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350677.1 100% 100%
7 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350678.1 100% 100%
8 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350679.1 100% 100%
9 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350680.1 100% 100%
10 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350681.1 100% 100%
11 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350682.1 100% 100%
12 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350683.1 100% 100%
13 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350684.1 100% 100%
14 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350685.1 100% 100%
15 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350686.1 100% 100%
16 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350687.1 100% 100%
17 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350688.1 100% 100%
18 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350689.1 100% 100%
19 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350690.1 100% 100%
20 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350691.1 100% 100%
21 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350692.1 100% 100%
22 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350693.1 100% 100%
23 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350694.1 100% 100%
24 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350695.1 100% 100%
25 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350696.1 100% 100%
26 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350697.1 100% 100%
27 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_004912.4 100% 100%
28 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_194454.2 100% 100%
29 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_194455.1 100% 100%
30 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_194456.1 100% 100%
31 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001013406.2 93.4% 93.4% 845_846ins144
32 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350669.1 93.4% 93.4% 845_846ins144
33 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350670.1 93.4% 93.4% 845_846ins144
34 human 889 KRIT1 KRIT1 ankyrin repeat contai... NM_001350671.1 67.4% 67.1% (many diffs)
35 mouse 79264 Krit1 KRIT1, ankyrin repeat conta... NM_030675.3 90.1% 94.5% (many diffs)
36 mouse 79264 Krit1 KRIT1, ankyrin repeat conta... XM_006503617.3 90.1% 94.5% (many diffs)
37 mouse 79264 Krit1 KRIT1, ankyrin repeat conta... XM_006503618.3 90.1% 94.5% (many diffs)
38 mouse 79264 Krit1 KRIT1, ankyrin repeat conta... NM_001170552.1 85.4% 89.8% (many diffs)
39 mouse 79264 Krit1 KRIT1, ankyrin repeat conta... NR_033173.1 31.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2277
ORF length:
2208
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gggaaatcca gaaaacatag aagatgcata tgttgctgtt attcgtccaa
121agaatactgc cagtctcaat tctcgggaat acagagctaa gtcatatgaa attttgttgc
181atgaagttcc cattgaagga cagaaaaaaa agagaaagaa agttttattg gaaacgaaac
241ttcaaggcaa cagtgaaata acacaaggca tattggatta cgtagtagaa accaccaaac
301caatttctcc tgcaaaccag ggtatcagag gaaaacgagt tgtactaatg aaaaaatttc
361ctctggatgg agagaagatg ggcagagaag catcattatt tattgttcca tcagttgtca
421aagataatac taaatacaca tataccccag gatgcccaat tttttactgc ttacaagata
481ttatgcgagt ctgtagtgaa tccagtactc attttgctac acttacagca aggatgttaa
541tagccttgga taagtggtta gatgaacgtc atgcacaatc tcactttatt ccagctttat
601tccgaccttc tcctcttgag cggataaaaa ctaatgtcat aaatcctgca tatgctactg
661aatcaggtca gacagaaaac tcactacata tgggctatag tgcactagaa ataaagagta
721aaatgttagc cctagagaaa gcagatacct gtatttacaa ccctttgttt ggatcagatc
781ttcagtatac aaatcgggta gataaagtgg taataaatcc atactttggt ctaggagctc
841cagactactc aaaaatccaa atacctaaac aggaaaaatg gcagagaagc atgagcagtg
901tcacagaaga caaggaacga cagtgggtag atgattttcc tctccaccga agcgcctgtg
961aaggagattc agaattacta agccgtcttc tcagtgaaag attttcagtc aaccagttag
1021atagtgacca ctgggcaccc attcattatg catgctggta tggaaaagtt gaggccactc
1081gcatattgtt agagaaagga aagtgcaatc caaacctttt aaatggacaa cttagttctc
1141ctcttcattt tgctgctgga ggaggacatg ctgaaatagt acagattctc ctaaaccacc
1201cagaaacgga tagacatata acagaccaac aaggaagatc tccattaaat atttgtgaag
1261aaaacaaaca aaacaactgg gaagaagctg caaaattgtt gaaggaagca attaacaaac
1321catatgaaaa agttcgaata tacagaatgg atgggtcata tcgttctgtt gaattgaagc
1381atggaaataa taccacagtg cagcagataa tggaaggaat gcgtctctct caagaaactc
1441agcaatattt cactatatgg atttgttcag aaaacctcag ccttcaactc aaaccatatc
1501ataaaccctt gcaacatgtt cgtgactggc cagaaatact tgctgaattg actaatctgg
1561atcctcaaag ggaaacacct cagctttttc taagaagaga tgtgagactt cccttggaag
1621ttgaaaaaca gattgaagac ccactagcta ttcttattct ctttgatgaa gccagatata
1681atttattgaa gggcttttat acagctcctg atgctaagct gataacattg gcaagtctgc
1741ttttgcaaat agtctatgga aattatgaga gtaaaaaaca caagcaaggt ttcctaaatg
1801aagaaaatct aaaatccatc gtacctgtta ccaaactgaa aagtaaggca cctcactgga
1861caaatcgcat acttcatgaa tacaagaatc tcagtacaag tgaaggtgtc agtaaagaaa
1921tgcatcacct tcagcgcatg ttcttacaga attgctggga aattcctact tatggagcag
1981catttttcac aggacagata tttacaaagg caagccccag caatcataaa gtcatccctg
2041tgtatgtagg agtgaatata aaaggacttc atctcctcaa catggaaact aaggctttac
2101tcatcagtct taagtatggt tgttttatgt ggcaattggg agatactgat acttgttttc
2161agatccatag catggaaaat aaaatgagct ttatagtaca tacaaaacag gctggtctcg
2221tggtaaaact gttaatgaag ctaaatggac agttaatgcc cactgaaaga aattcattgc
2281caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt
2341ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga
2401tta

Download FASTA (ORF) (Full)