Construct: ORF ccsbBroad304_00495
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013140.1_s304c1, BRDN0000406595
- Derived from:
- ccsbBroadEn_00495
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ELAVL2 (1993)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_00495
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | NM_001171195.2 | 100% | 100% | |
2 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | NM_001171197.2 | 100% | 100% | |
3 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | NM_001351477.2 | 100% | 100% | |
4 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | NM_001351478.1 | 100% | 100% | |
5 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | NM_001351472.2 | 96.3% | 96.3% | 712_750del |
6 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | NM_001351473.1 | 96.3% | 96.3% | 712_750del |
7 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | NM_001351474.1 | 96.3% | 96.3% | 712_750del |
8 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | NM_001351475.1 | 96.3% | 96.3% | 712_750del |
9 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | NM_001351476.2 | 96.3% | 96.3% | 712_750del |
10 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | NM_004432.5 | 96.3% | 96.3% | 712_750del |
11 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | NM_001351467.2 | 96.1% | 96.1% | 712_753del |
12 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | NM_001351468.2 | 96.1% | 96.1% | 712_753del |
13 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | NM_001351469.1 | 96.1% | 96.1% | 712_753del |
14 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | NM_001351470.2 | 96.1% | 96.1% | 712_753del |
15 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | NM_001351471.2 | 96.1% | 96.1% | 712_753del |
16 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | XM_005251393.3 | 96.1% | 96.1% | 712_753del |
17 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | XM_011517785.2 | 96.1% | 96.1% | 712_753del |
18 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | XM_011517786.2 | 96.1% | 96.1% | 712_753del |
19 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | NM_001351466.2 | 92.7% | 92.7% | 1_42del;754_792del |
20 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | XM_011517783.3 | 92.5% | 92.5% | 1_42del;754_795del |
21 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | NM_001351464.2 | 92.2% | 92.2% | 1_87del |
22 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | NM_001351465.2 | 92.2% | 92.2% | 1_87del |
23 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | XM_011517776.2 | 92% | 92% | 1_87del;799_801delAGC |
24 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | XM_017014415.1 | 92% | 92% | 1_51del;763_801del |
25 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | NM_001351462.2 | 89.4% | 89.4% | 1_84del;796_834del |
26 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | NM_001351463.2 | 89.4% | 89.4% | 1_84del;796_834del |
27 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | NM_001351456.2 | 89.1% | 89.1% | 1_87del;799_837del |
28 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | NM_001351457.2 | 89.1% | 89.1% | 1_87del;799_837del |
29 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | NM_001351458.1 | 89.1% | 89.1% | 1_87del;799_837del |
30 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | NM_001351459.2 | 89.1% | 89.1% | 1_87del;799_837del |
31 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | NM_001351460.2 | 89.1% | 89.1% | 1_84del;796_837del |
32 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | NM_001351461.2 | 89.1% | 89.1% | 1_84del;796_837del |
33 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | NM_001351455.2 | 88.9% | 88.9% | 1_87del;799_840del |
34 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | XM_006716735.4 | 88.9% | 88.9% | 1_87del;799_840del |
35 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | XM_011517779.3 | 88.9% | 88.9% | 1_87del;799_840del |
36 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | XM_011517780.3 | 88.9% | 88.9% | 1_87del;799_840del |
37 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | XM_011517778.2 | 88.2% | 88.2% | 1_96del;808_849del |
38 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | XR_929212.2 | 73.2% | 1_106del;820_933del;1141_1142ins117 | |
39 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | XR_002956763.1 | 66.4% | 1_195del;909_1061del;1269_1270ins117 | |
40 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | XR_929211.1 | 61.7% | 1_106del;820_972del;1060_1061ins237 | |
41 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | XM_024447438.1 | 60.9% | 60.9% | 0_1ins405 |
42 | human | 1993 | ELAVL2 | ELAV like RNA binding prote... | XM_017014426.1 | 58.6% | 58.6% | 0_1ins405;307_348del |
43 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_030253245.1 | 95.3% | 99.7% | (many diffs) |
44 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_030253246.1 | 95.3% | 99.7% | (many diffs) |
45 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | NM_207686.1 | 95.1% | 99.4% | (many diffs) |
46 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_030253242.1 | 95.1% | 99.4% | (many diffs) |
47 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_030253243.1 | 95.1% | 99.4% | (many diffs) |
48 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_030253244.1 | 95.1% | 99.4% | (many diffs) |
49 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | NM_001177883.2 | 91.9% | 96.1% | (many diffs) |
50 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | NM_001374238.1 | 91.9% | 96.1% | (many diffs) |
51 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_030253239.1 | 91.9% | 96.1% | (many diffs) |
52 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_030253241.1 | 91.9% | 96.1% | (many diffs) |
53 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | NM_010486.2 | 91.6% | 95.8% | (many diffs) |
54 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_006502789.3 | 91.6% | 95.8% | (many diffs) |
55 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_006502790.3 | 91.6% | 95.8% | (many diffs) |
56 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_006502791.3 | 91.6% | 95.8% | (many diffs) |
57 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | NM_207685.2 | 88.4% | 92.4% | (many diffs) |
58 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_006502788.4 | 88.4% | 92.4% | (many diffs) |
59 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_006502787.4 | 88.2% | 92.2% | (many diffs) |
60 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_030253238.1 | 87.7% | 91.7% | (many diffs) |
61 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | NM_001347149.2 | 85% | 88.9% | (many diffs) |
62 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | NM_001374236.1 | 85% | 88.9% | (many diffs) |
63 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | NM_001374237.1 | 85% | 88.9% | (many diffs) |
64 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_017319989.2 | 85% | 88.9% | (many diffs) |
65 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_030253236.1 | 85% | 88.9% | (many diffs) |
66 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_030253237.1 | 85% | 88.9% | (many diffs) |
67 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | NM_001357188.1 | 84.8% | 88.6% | (many diffs) |
68 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | NM_001357189.1 | 84.8% | 88.6% | (many diffs) |
69 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_006502784.4 | 84.8% | 88.6% | (many diffs) |
70 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_006502785.4 | 84.8% | 88.6% | (many diffs) |
71 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_017319987.2 | 84.8% | 88.6% | (many diffs) |
72 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_030253232.1 | 84.8% | 88.6% | (many diffs) |
73 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_030253233.1 | 84.8% | 88.6% | (many diffs) |
74 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_030253234.1 | 84.8% | 88.6% | (many diffs) |
75 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_006502781.4 | 63.9% | 66.8% | (many diffs) |
76 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_011240448.3 | 63.8% | 66.7% | (many diffs) |
77 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_030253231.1 | 62.5% | 65.3% | (many diffs) |
78 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_006502779.4 | 62.3% | 65.2% | (many diffs) |
79 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_030253247.1 | 44.9% | 44.1% | (many diffs) |
80 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_017319990.2 | 31.3% | 30.9% | (many diffs) |
81 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XM_017319991.2 | 31.3% | 30.9% | (many diffs) |
82 | mouse | 15569 | Elavl2 | ELAV like RNA binding prote... | XR_003954881.1 | 4.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1104
- ORF length:
- 1038
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga aacacaactg tctaatgggc caacttgcaa taacacagcc aatggtccaa 121 ccaccataaa caacaactgt tcgtcaccag ttgactctgg gaacacagaa gacagcaaga 181 ccaacttaat agtcaactac cttcctcaga acatgacaca ggaggaacta aagagtctct 241 ttgggagcat tggtgaaata gagtcctgta agcttgtaag agacaaaata acagggcaga 301 gcttgggata tggctttgtg aactacattg accccaagga tgcagagaaa gctatcaaca 361 ccctgaatgg attgagactt caaaccaaaa caataaaagt ttcctatgct cgcccaagtt 421 cagcttctat cagagatgca aatttatatg tcagcggact tccaaaaaca atgacccaga 481 aggagttgga acagcttttt tcacaatatg gacgcattat tacttctcgt attcttgtcg 541 accaggtcac tggcatatca aggggtgtag ggtttattcg atttgacaag cgaattgagg 601 cagaagaagc tatcaaaggc ctaaatggcc agaaacctcc cggtgccacg gagccaatca 661 ctgtaaagtt tgctaataac ccaagccaaa aaaccaatca ggccatcctt tcccagctgt 721 accagtctcc aaacagaagg tatccaggac cgctagctca gcaggcacag cgttttaggt 781 tttctccaat gaccattgac ggaatgacca gtttggctgg aattaatatc cctgggcacc 841 ctggaacagg gtggtgtata tttgtgtaca acctggctcc tgacgcagat gagagtatcc 901 tgtggcaaat gtttgggcct tttggagctg tcaccaatgt gaaggtcatc cgtgacttta 961 acaccaataa atgcaaaggt tttggatttg tgactatgac aaactatgat gaggctgcca 1021 tggcgatagc tagcctcaat ggataccgtc tgggagacag agtactgcag gtctccttta 1081 agacaaacaa aacgcacaaa gcctacccaa ctttcttgta caaagtggtt ggtaagccta 1141 tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc 1201 gcgttaagtc gacaatcaac ctctggatta